PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf02382g04034.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family WRKY
Protein Properties Length: 154aa    MW: 17774.2 Da    PI: 9.7565
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf02382g04034.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.35.6e-3275133159
                               ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                               ldDgy+WrKYGqK vk++++prsYYrCt+++C+vkk+++r ++d+++v++tYeg Hnh+
  Peinf101Scf02382g04034.1  75 LDDGYKWRKYGQKAVKNNRHPRSYYRCTYHTCNVKKQIQRLSKDTTIVVTTYEGIHNHP 133
                               59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.2E-3362133IPR003657WRKY domain
SuperFamilySSF1182906.15E-2868134IPR003657WRKY domain
PROSITE profilePS5081128.52970135IPR003657WRKY domain
SMARTSM007748.4E-3675134IPR003657WRKY domain
PfamPF031065.6E-2576133IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MPIQNSSTLG LDINDWVNGL LSSPIIDNHD HPTTVGDQQN SSSCLIRNKG NKVIGKEKYV  60
PPRISFQTRS SEDILDDGYK WRKYGQKAVK NNRHPRSYYR CTYHTCNVKK QIQRLSKDTT  120
IVVTTYEGIH NHPCDKLMET LSPLLKQLQF LPRF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-2465132774Probable WRKY transcription factor 4
2lex_A2e-2465132774Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754472e-52HG975447.1 Solanum pennellii chromosome ch08, complete genome.
GenBankHG9755202e-52HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016552679.13e-64PREDICTED: probable WRKY transcription factor 75
RefseqXP_019160501.12e-64PREDICTED: probable WRKY transcription factor 43
SwissprotQ8VWQ41e-55WRK56_ARATH; Probable WRKY transcription factor 56
TrEMBLA0A1U8F8W76e-63A0A1U8F8W7_CAPAN; probable WRKY transcription factor 75
TrEMBLA0A2G3ADM14e-63A0A2G3ADM1_CAPAN; Putative WRKY transcription factor 56
STRINGXP_009598201.17e-62(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA63742433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64000.15e-58WRKY DNA-binding protein 56