PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf02470g01030.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family LBD
Protein Properties Length: 168aa    MW: 18574.2 Da    PI: 7.303
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf02470g01030.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601421.8e-4461051100
                    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                               +Ca+Ck+lrr+CakdC++apyfp ++p+kfa+vhk+FGasnv+k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lq+
  Peinf101Scf02470g01030.1   6 PCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPIQQRGDAVSSLVYEANARVRDPVYGCVGAISFLQN 90 
                               7************************************************************************************ PP

                    DUF260  86 qleqlkaelallkee 100
                               q++ql+ +la++++e
  Peinf101Scf02470g01030.1  91 QVSQLQMQLAVAQAE 105
                               ***********9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.7195106IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-436103IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MGGSSPCASC KLLRRRCAKD CIFAPYFPPD DPHKFAIVHK VFGASNVSKM LQELPIQQRG  60
DAVSSLVYEA NARVRDPVYG CVGAISFLQN QVSQLQMQLA VAQAEILCIQ MQHEPVSLPT  120
TLIEPDEKSP FSTSNATNNF NNLQQYLTFA SSSTSVMQDT VKRESLWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-5121217129LOB family transfactor Ramosa2.1
5ly0_B7e-5121217129LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754452e-58HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBankHG9755182e-58HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027150317.11e-98LOB domain-containing protein 12
SwissprotQ8LBW32e-76LBD12_ARATH; LOB domain-containing protein 12
TrEMBLA0A068ULU33e-97A0A068ULU3_COFCA; Uncharacterized protein
STRINGXP_009629688.12e-95(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.16e-78LBD family protein
Publications ? help Back to Top
  1. Penfield S, et al.
    Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1.
    Plant Cell, 2004. 16(10): p. 2705-18
    [PMID:15367715]