PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf02486g00010.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

WOX

Protein Properties

Length: 197aa MW: 22547.9 Da PI: 10.0899

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf02486g00010.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.9	1.7e-18	3	63	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++t++ql +L++l++k r+p+ + ++++++l +++ ++V++WFqN++a++++ Peinf101Scf02486g00010.1 3 RPRWSPTPQQLMILQDLYRKgLRNPNSCQVQKITAHLslygKIQCKNVFYWFQNHKARDRQ 63 89***************99***********************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.268	1	64	IPR001356	Homeobox domain
SMART	SM00389	6.5E-6	1	68	IPR001356	Homeobox domain
CDD	cd00086	9.00E-5	2	64	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.6E-7	3	63	IPR009057	Homeodomain-like
Pfam	PF00046	3.6E-16	3	63	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.23E-11	3	63	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MPRPRWSPTP QQLMILQDLY RKGLRNPNSC QVQKITAHLS LYGKIQCKNV FYWFQNHKAR 60 DRQKLRKELL HQMQKNPNDD NAHQISLLTN TTNSNVLQSV GNFPSFPPIV HTLYPQSPAI 120 FLRQAEGKDT SSAQMLNNMG KVDLQKQCMI ENGMISTNFQ GWVLMMADNG HNSIPCSSNR 180 PLETLELFPV KATGIKE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975523	3e-73	HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016487673.1	1e-104	PREDICTED: WUSCHEL-related homeobox 3-like
TrEMBL	A0A1S4BFQ5	1e-103	A0A1S4BFQ5_TOBAC; WUSCHEL-related homeobox 3-like
STRING	XP_009793790.1	1e-104	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2959	19	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28610.1	8e-33	WOX family protein