PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf02501g00003.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

M-type_MADS

Protein Properties

Length: 192aa MW: 21498.7 Da PI: 7.6845

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf02501g00003.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	37.4	3.3e-12	6	41	5	40
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviif 40 +k r v ++ +n++ KKA E+S+LC++e+a+iif Peinf101Scf02501g00003.1 6 DKHSRDVALTHMQNTLCKKAMEISILCGIEIAIIIF 41 78899*****************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	0.0074	1	53	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	12.18	1	54	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.4E-13	2	69	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	7.1E-9	6	41	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MRLTRDKHSR DVALTHMQNT LCKKAMEISI LCGIEIAIII FRLGDPPVLY GNPDVESVVN 60 KFLKAQLTKC LSCRCMLCER ASCREERCKI VKKGKELQAN DENQNHVDGW FKRFTSKNFE 120 AADLGRVEQL NQKIDKLSKY LNNEIVLLQS AIGADDSNST EGMNLTGSED PKSVSEMSVA 180 SSSTISPNWL SL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2297	12	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34440.1	1e-11	AGAMOUS-like 29