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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Peinf101Scf02501g00013.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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| Family | M-type_MADS | ||||||||
| Protein Properties | Length: 68aa MW: 7943.52 Da PI: 10.6752 | ||||||||
| Description | M-type_MADS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | SRF-TF | 28.9 | 1.5e-09 | 16 | 47 | 5 | 36 |
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEE CS
SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaeva 36
+k r ++ +n++ KKA E+S+LC++e+a
Peinf101Scf02501g00013.1 16 DKHSRDAALTHMQNTLCKKAMEISILCGIEIA 47
6778888999999*****************97 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50066 | 11.367 | 4 | 47 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 8.24E-10 | 5 | 47 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 4.2E-6 | 16 | 47 | IPR002100 | Transcription factor, MADS-box |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 68 aa Download sequence Send to blast |
MSFQMRKKID MRLTRDKHSR DAALTHMQNT LCKKAMEISI LCGIEIARPG IRQFYMVIQM 60 LNQLLTSS |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA2297 | 12 | 58 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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