PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf02502g00011.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

MYB_related

Protein Properties

Length: 170aa MW: 18435.8 Da PI: 7.5723

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf02502g00011.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.7	3.5e-10	14	45	1	32
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 +g+WT+eEd++l+++++ +G g+W++ ++ g Peinf101Scf02502g00011.1 14 KGAWTKEEDQRLINYIRTHGEGCWRSLPKAAG 45 79***********************9988665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.2E-12	5	43	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.61E-8	9	45	IPR009057	Homeodomain-like
PROSITE profile	PS50090	7.306	9	42	IPR017877	Myb-like domain
Pfam	PF00249	2.3E-8	14	44	IPR001005	SANT/Myb domain
CDD	cd00167	1.53E-6	16	42	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence Send to blast
MGRSPCCEKA HTNKGAWTKE EDQRLINYIR THGEGCWRSL PKAAGIYCST IKSTSTAATP 60 LSQNDQKPMS NSISSLEDTK CNSSTTEEVQ PLDSPLVAPP VTGEVMINLE LSIGLPIFQA 120 KITDQSSSIS SNSAKEIGGK TVCLCWQVGS QNGQQFCGKC QTTNGFYRYC

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC209513	2e-43	AC209513.1 Solanum lycopersicum chromosome 6 clone C06HBa0286N17, complete sequence.
GenBank	HG975518	2e-43	HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009772294.1	2e-38	PREDICTED: myb-related protein 330-like
Refseq	XP_016495904.1	2e-38	PREDICTED: myb-related protein 330-like
TrEMBL	A0A1S4C4A4	6e-37	A0A1S4C4A4_TOBAC; myb-related protein 330-like
TrEMBL	A0A1U7WCB1	6e-37	A0A1U7WCB1_NICSY; myb-related protein 330-like
STRING	XP_009772294.1	9e-38	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA15484	7	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09460.1	2e-27	myb domain protein 6