PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf02550g00012.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

LBD

Protein Properties

Length: 160aa MW: 18302.9 Da PI: 8.9021

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf02550g00012.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	62.3	1.3e-19	5	52	1	48
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllka 48 +CaaCk lrr+C++dC++ pyfp ++p++f +vh+++Gasnv k+l++ Peinf101Scf02550g00012.1 5 RCAACKQLRRRCPSDCIFLPYFPPNNPQRFSFVHRIYGASNVGKMLQR 52 6*********************************************97 PP
2	DUF260	50	8.5e-16	72	126	46	100
DUF260 46 lkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +++++e++r d+++sl+yeA +r+++P+yG+vg+i+ l+q++ +l+ +l ++++e Peinf101Scf02550g00012.1 72 YQQVQEHHRADVANSLYYEAYCRIKNPIYGCVGIISVLHQEIYNLQCQLTKVQAE 126 57889*********************************************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	20.307	4	127	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.3E-32	5	124	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
MTSTRCAACK QLRRRCPSDC IFLPYFPPNN PQRFSFVHRI YGASNVGKML QRKYSKNGIF 60 PHSNWCIFLL KYQQVQEHHR ADVANSLYYE AYCRIKNPIY GCVGIISVLH QEIYNLQCQL 120 TKVQAEISVL EAQAQTQAQQ GHQIELSPTI SGNSFGDQNG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	7e-31	6	127	12	111	LOB family transfactor Ramosa2.1
5ly0_B	7e-31	6	127	12	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	3e-57	HG975445.1 Solanum pennellii chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019238658.1	2e-67	PREDICTED: LOB domain-containing protein 24-like
TrEMBL	A0A1J6IQ34	2e-71	A0A1J6IQ34_NICAT; Lob domain-containing protein 24
STRING	XP_009780781.1	9e-66	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5277	20	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	3e-42	LOB domain-containing protein 24