PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf02569g00006.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family FAR1
Protein Properties Length: 772aa    MW: 89627.8 Da    PI: 7.6842
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf02569g00006.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR162.99.5e-2063155290
                      FAR1   2 fYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkle 82 
                               +Y ++Ak+vGFsvr+++  +s ++   ++kr++vC + g+++++k  +++++r r+++r++C+ak+ + ke      +w v  ++
  Peinf101Scf02569g00006.1  63 CYVSFAKKVGFSVRRDHYLESeEHPMGTYKRDYVCHRAGSPRSQKVVEKERQRDRKSSRCNCNAKMSIAKELidgIPRWIVLYFD 147
                               7****************999944556699***************999999999****************998845569******* PP

                      FAR1  83 leHnHela 90 
                               + HnHel 
  Peinf101Scf02569g00006.1 148 NVHNHELL 155
                               ******96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.0E-1763155IPR004330FAR1 DNA binding domain
PfamPF105516.2E-29277370IPR018289MULE transposase domain
PROSITE profilePS509669.507566599IPR007527Zinc finger, SWIM-type
SMARTSM005753.0E-5574601IPR006564Zinc finger, PMZ-type
PfamPF044341.3E-7574598IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 772 aa     Download sequence    Send to blast
MDSTVGLSRS HCPCGDNGCY INGDVIVRST EIVNEELAQE NATGNEDLHR GTVFSTHEEA  60
YNCYVSFAKK VGFSVRRDHY LESEEHPMGT YKRDYVCHRA GSPRSQKVVE KERQRDRKSS  120
RCNCNAKMSI AKELIDGIPR WIVLYFDNVH NHELLNEKEV RFLPAYRNID IIDQKRITLL  180
AKAGCSMSLI RRVLELEKGI DVGQLSFTEK DIRNFLQLES STNIEYDALE LLKVCKSLKD  240
KDVDFQYDFT VDACQRLEHI IWAFGDSTHA YEIFGDVVVF DTTYRLNRYE MPLGVWIGVN  300
NHGNSVFFGC VLLRNEKASS FSWALKSFVR LMKGKHPQTI LTDQDLGLTE AIANELPHTK  360
HAFCIWHITS KFSTWFSFPL GSRYVQFKSE FHKIYELGSI EEFEQQWDEL IAKFDLESDR  420
HIKLLYANRA SWALPYLKGY FFAGMTTTSR SESINAYLKK FLHARTSLKE FVEQVGAAVS  480
IRNYAAEEAI MRQKYYNPQI KTFMPMEKNA SKVLTPFAFK LLQNEMILSV EYGLFSNGDD  540
SYAVRHYSKI DGGRFVYWNP XGRLVYWNPL EEVVRCSCQE FEFSGILCRH CIRVLSSHNY  600
FMLPDKYFLP RWRQENSLVL KFTHTTNPPN DANEFHSLQS IIRYLSLESM KSKGRLDCAK  660
KELERVLQVV QCFPENEHIH EEHGQFIISQ TTEHDSLDDD YHVENPQQFQ TKGRKRGKKL  720
VGGVEAAKKP RYCQSLIVVE PVTTQKIVHS KEKQLKFQYL NLLTSKYYSS SL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1712719GRKRGKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016499085.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 11-like
TrEMBLA0A396JX520.0A0A396JX52_MEDTR; Putative transcription factor FAR family
STRINGXP_009596355.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7183722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.10.0FAR1-related sequence 11