PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf02621g01007.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family C2H2
Protein Properties Length: 179aa    MW: 20058.1 Da    PI: 11.0844
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf02621g01007.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.6e-055072123
                              EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                              ++C++C++ F ++  L  H++ H
  Peinf101Scf02621g01007.1 50 FECQYCHREFANSQALGGHQNAH 72
                              89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.48E-64677No hitNo description
Gene3DG3DSA:3.30.160.602.0E-44776IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139128.2E-64974IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.7395077IPR007087Zinc finger, C2H2
PROSITE patternPS0002805272IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MGESSVHSTT SLSSSPPRQV MKLFGFPVTD CDRTTALPPP LLHDVDSKRF ECQYCHREFA  60
NSQALGGHQN AHKKERQKTK RAHLVSVDHQ QRFRPVAPMI NAHAVRSSGP LIGLTNAAMS  120
RYGARFRSQV LSGVPLRFQI LRPQQIMAVQ TQDGTINNGM EVDLHLRLAP PQRQIMKMP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015080072.13e-63zinc finger protein 6-like
TrEMBLA0A2G2XR524e-62A0A2G2XR52_CAPBA; Zinc finger protein 8
STRINGSolyc01g060420.2.12e-61(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA105631724
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06650.14e-15C2H2 family protein