PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf02695g01003.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family GRAS
Protein Properties Length: 573aa    MW: 63284.9 Da    PI: 6.2023
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf02695g01003.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3212.5e-982045723373
                      GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                               +l++e+A+a+s++++  a ++L+rl + a+ +g++ qRl+ay++ AL++ ++    + y+  p+ e +    +e+  +++ ++ev
  Peinf101Scf02695g01003.1 204 QLIVEAATAISDKKTDIAVEILTRLAKVANVNGSSEQRLTAYMVSALRSCVNP---TEYRP-PVLELQ---NKEHRIFTQNLYEV 281
                               899*************************************************9...33322.222332...4566667789**** PP

                      GRAS  88 sPilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesgskeeleetgerLak 167
                               sP++k+++++aN aIleav+ +  +++H+iDfdi+qG+Q+  Ll+aLas++   ++p +l+iT+v +   +  ++++++g+ L++
  Peinf101Scf02695g01003.1 282 SPCFKLGFMAANLAILEAVADCteNKLHVIDFDIGQGGQYSHLLHALASKKtdtNKPIMLKITAVTEIMGKVDDKVKSIGDDLKS 366
                               ********************988899**********************9998866677*********8888************** PP

                      GRAS 168 fAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnses 252
                               +A+++g+ ++fnv +  +++dl+ e+L ++++ +laVn++++l+rl+desv++e+ rd++L+ vk+lsPkvv+vveqe++ n++ 
  Peinf101Scf02695g01003.1 367 LANKVGICLNFNV-IYCKISDLSRENLGIENDTVLAVNFAFKLYRLPDESVTTENLRDALLRRVKGLSPKVVTVVEQELNWNTAG 450
                               *************.5778******************************************************************* PP

                      GRAS 253 FlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqa 337
                               +++r+ ea+ yy al+dslea+ ++++  r+k+E+  l+r+i n vaceg++r+er+e ++kWr+rl++aGF+p p+s+ + ++ 
  Peinf101Scf02695g01003.1 451 LVARVNEACGYYGALLDSLEATESKDEMGRVKIEEG-LSRKIANSVACEGRDRVERCELFGKWRARLSMAGFGPRPMSQLVGDSL 534
                               **********************99999*********.*******************************************99988 PP

                      GRAS 338 klllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaW 373
                                  l+  +  + g++v+e+sg +++gW++++ +++SaW
  Peinf101Scf02695g01003.1 535 LKKLNSGPrgNPGFTVNEQSGGICFGWMGKTHTVASAW 572
                               7777766557889************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098545.481176551IPR005202Transcription factor GRAS
PfamPF035148.6E-96204572IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
MSSGFSGRAP DFYSATTGRS TMIPMNNPQF QFQHPYHSPL SGILTDGVHR TPSFIGKRPL  60
SEFQQYEQIQ PLGLYLRNVK PRNYQQIFPS DLRPSLLPID STPSTDSVAQ QAMLASYLNQ  120
VQNSLYQETE QKMMNQLHEL EKQLFDDTDD DVDDTVSVVT NSEWSETIQN LIIPSSNHLS  180
PASSSTTSSC CSSIDSAPVS CPKQLIVEAA TAISDKKTDI AVEILTRLAK VANVNGSSEQ  240
RLTAYMVSAL RSCVNPTEYR PPVLELQNKE HRIFTQNLYE VSPCFKLGFM AANLAILEAV  300
ADCTENKLHV IDFDIGQGGQ YSHLLHALAS KKTDTNKPIM LKITAVTEIM GKVDDKVKSI  360
GDDLKSLANK VGICLNFNVI YCKISDLSRE NLGIENDTVL AVNFAFKLYR LPDESVTTEN  420
LRDALLRRVK GLSPKVVTVV EQELNWNTAG LVARVNEACG YYGALLDSLE ATESKDEMGR  480
VKIEEGLSRK IANSVACEGR DRVERCELFG KWRARLSMAG FGPRPMSQLV GDSLLKKLNS  540
GPRGNPGFTV NEQSGGICFG WMGKTHTVAS AWC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-3422057221374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006363331.10.0PREDICTED: scarecrow-like protein 8
SwissprotQ9FYR71e-137SCL8_ARATH; Scarecrow-like protein 8
TrEMBLA0A2G2WIR70.0A0A2G2WIR7_CAPBA; Uncharacterized protein
TrEMBLM1CXM00.0M1CXM0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000769320.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40232443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-136SCARECROW-like 8