PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf02760g00005.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

LBD

Protein Properties

Length: 219aa MW: 24371.6 Da PI: 6.2557

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf02760g00005.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	101.6	7e-32	2	101	1	95
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80 +C++C+vlr++C+++C+l+p++ ++q +++ +v+k+FG++ ++++++a+pe++r+++++sl+yeA r+ +Pv+Gavg++ Peinf101Scf02760g00005.1 2 SCNGCRVLRKGCSENCILRPCLqwietSESQGHATVFVAKFFGRAGLMSFISAVPENQRPALFQSLLYEAAGRTVNPVNGAVGLL 86 6*******************9999777889************************************************* PP DUF260 81 lklqqqleqlkaela 95 +++++q++q+++e+ Peinf101Scf02760g00005.1 87 WTGNWQVCQAAVETI 101 ********99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	20.26	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.0E-27	2	100	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006807	Biological Process	nitrogen compound metabolic process
GO:0060776	Biological Process	simple leaf morphogenesis

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MSCNGCRVLR KGCSENCILR PCLQWIETSE SQGHATVFVA KFFGRAGLMS FISAVPENQR 60 PALFQSLLYE AAGRTVNPVN GAVGLLWTGN WQVCQAAVET ILRGGALRPI PEFLGASVDE 120 ISDCTNIYNI QHDYNQNMRT NMQKRRRFPE EASKVMQLAD LDLSLTPGFN QKMYSTSPEI 180 NLRRPETPSM NSEESGTTTC FESGDHQGIN EPKLLSLFN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019227577.1	1e-129	PREDICTED: LOB domain-containing protein 37-like
Swissprot	Q9FN11	1e-81	LBD37_ARATH; LOB domain-containing protein 37
TrEMBL	A0A314KRA8	1e-127	A0A314KRA8_NICAT; Lob domain-containing protein 37
STRING	XP_009801229.1	1e-128	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA966	24	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	4e-84	LOB domain-containing protein 37

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]