PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf02764g00025.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family NAC
Protein Properties Length: 372aa    MW: 42683.8 Da    PI: 6.4457
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf02764g00025.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM184.52.5e-57221491129
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                               lppGfrFhPtdee++++yL++kv +k++++   ++evd++k+ePwdLp+k+k +ekewyfF++rd+ky+tg r+nrat+sgyWka
  Peinf101Scf02764g00025.1  22 LPPGFRFHPTDEEIITCYLQEKVMDKRFTA-ISVAEVDLNKSEPWDLPAKAKMGEKEWYFFCQRDRKYPTGMRTNRATESGYWKA 105
                               79*************************999.77***************99999******************************** PP

                       NAM  86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                               tgkdke+++ kg lvg+kktLvfykgrapkgekt+Wvmheyrle
  Peinf101Scf02764g00025.1 106 TGKDKEIYKGKGCLVGMKKTLVFYKGRAPKGEKTNWVMHEYRLE 149
                               *********9********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.06E-6318173IPR003441NAC domain
PROSITE profilePS5100559.67522173IPR003441NAC domain
PfamPF023657.5E-3023148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MGTPVLPMQV INQESDHDIL NLPPGFRFHP TDEEIITCYL QEKVMDKRFT AISVAEVDLN  60
KSEPWDLPAK AKMGEKEWYF FCQRDRKYPT GMRTNRATES GYWKATGKDK EIYKGKGCLV  120
GMKKTLVFYK GRAPKGEKTN WVMHEYRLEG KLSYNCFHKA AMEEWVICRV FNKSIGVRRS  180
PLLLDSFVED LLDSPSSLPS LMEMPLSSSC HDDKPCTSSY RDELNNTSSD EIHSSAYFST  240
GFFNNNNYYK QDQLLLMPKQ EEAEKSYGLF VPTHHIFTGI DTYQHNXLFV PTHHIFTGID  300
TYQHNNHLAS SSSYDQTLFL PNSKFSEFRT IPNYSLTCDG TTLERRQLSS NNSMISLSQD  360
TGLSTDVANE IS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-54111743169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00518DAPTransfer from AT5G18270Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF5102140.0AF510214.1 Petunia x hybrida nam-like protein 17 (NH17) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009587307.11e-156PREDICTED: NAC domain-containing protein 79-like isoform X1
RefseqXP_016471991.11e-156PREDICTED: NAC domain-containing protein 79-like
RefseqXP_018622492.11e-156PREDICTED: NAC domain-containing protein 92-like isoform X2
SwissprotQ9FK441e-97NAC87_ARATH; NAC domain-containing protein 87
TrEMBLQ8LKN70.0Q8LKN7_PETHY; Nam-like protein 17 (Fragment)
STRINGXP_009587307.11e-155(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15224279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.22e-98Arabidopsis NAC domain containing protein 87
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]