PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf02792g00004.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

FAR1

Protein Properties

Length: 200aa MW: 22874.7 Da PI: 6.232

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf02792g00004.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	83	5.1e-26	81	171	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtklele 84 +fY eYAk++GF++r+++ ++s +n ++ r+fvCs+eg+++ ++ +++ ++++tr gCka++++ ++ +kw+vtk++ e Peinf101Scf02792g00004.1 81 DFYYEYAKRTGFTIRTNRIRHSLKNMAVIGRDFVCSREGFPAAKHAIrKDRVLPPKPVTREGCKAMIRLAARDGDKWVVTKFVAE 165 6**************************************99988722333449************************** PP FAR1 85 HnHela 90 HnH+l+ Peinf101Scf02792g00004.1 166 HNHKLM 171 **97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-23	81	171	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MASSDRHFFY DDDQGSDDDN FQRFSENEAN EDGLVLLHTC NAHDAQNDEL IFLEPAPNSS 60 HMEIVEPFTG MTFSSLDDAK DFYYEYAKRT GFTIRTNRIR HSLKNMAVIG RDFVCSREGF 120 PAAKHAIRKD RVLPPKPVTR EGCKAMIRLA ARDGDKWVVT KFVAEHNHKL MTNCKFSGEL 180 QTINIVSEVR LVVVHDLVTY

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028074568.1	2e-97	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_028074569.1	2e-97	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A438DJW9	6e-89	A0A438DJW9_VITVI; Protein FAR1-related sequence 5
TrEMBL	B9HH50	1e-89	B9HH50_POPTR; Uncharacterized protein
TrEMBL	F6HYS5	1e-89	F6HYS5_VITVI; Uncharacterized protein
STRING	VIT_05s0102g00440.t01	2e-90	(Vitis vinifera)
STRING	POPTR_0007s01950.1	2e-90	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA18960	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	1e-25	FAR1 family protein