PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf02805g00020.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

C3H

Protein Properties

Length: 183aa MW: 20202.1 Da PI: 8.3846

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf02805g00020.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25.9	1.7e-08	12	31	8	27
GGGGTS--TTTTT-SS-SSS CS zf-CCCH 8 ffartGtCkyGdrCkFaHgp 27 f+ +tGtCk+G+ CkF+H++ Peinf101Scf02805g00020.1 12 FYKKTGTCKFGAICKFHHPR 31 8*****************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00642	1.6E-6	12	31	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.4E-4	12	32	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	9.235	12	32	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MWFVQLSWSG LFYKKTGTCK FGAICKFHHP REIQLTSLKQ ENSSAGMPGS ANNGMTEDVT 60 LIKQLSVPAL LHNSKGPPIR PGEVDCPFYV NTSRVSKMVI HQTCRLSSLR LSHIGGFGGG 120 ITVKELKGGN ISEVTLLDEL NSNELESQYE CLATRALLRQ PSSPPSSSEQ FMEHNSVCTR 180 IQF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	5e-21	floral homeotic protein (HUA1)