PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf02918g01040.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

LBD

Protein Properties

Length: 122aa MW: 13828 Da PI: 8.9516

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf02918g01040.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	86.1	4.9e-27	5	95	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +CaaCk lrr+C++dC++ pyfp ++p++f +vhk+FGasnv k+l+++p ++r+ +r+++P+yG+vg+i+ l q Peinf101Scf02918g01040.1 5 RCAACKQLRRRCPSDCIFLPYFPPNNPQRFSFVHKIFGASNVGKMLQRIPCTTRP----------YCRIKNPIYGCVGIISVLYQ 79 6************************************************9998..........47************** PP DUF260 86 qleqlkaelallkeel 101 ++ +l+ +la++++e+ Peinf101Scf02918g01040.1 80 EIYNLQCQLAKVQAEI 95 *********99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	15.283	4	95	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.6E-26	5	92	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 122 aa Download sequence Send to blast
MTSTRCAACK QLRRRCPSDC IFLPYFPPNN PQRFSFVHKI FGASNVGKML QRIPCTTRPY 60 CRIKNPIYGC VGIISVLYQE IYNLQCQLAK VQAEISLVEA HQEQQIDLSP RISGNSFGDQ 120 NG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-28	6	95	12	111	LOB family transfactor Ramosa2.1
5ly0_B	6e-28	6	95	12	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	2e-45	HG975445.1 Solanum pennellii chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016472877.1	9e-55	PREDICTED: LOB domain-containing protein 24-like
Swissprot	P59467	1e-37	LBD23_ARATH; LOB domain-containing protein 23
Swissprot	P59468	1e-37	LBD24_ARATH; LOB domain-containing protein 24
TrEMBL	A0A1J6IQ34	1e-55	A0A1J6IQ34_NICAT; Lob domain-containing protein 24
STRING	XP_009780781.1	4e-53	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5277	20	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	5e-40	LOB domain-containing protein 24