PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf02985g01015.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family LBD
Protein Properties Length: 392aa    MW: 42554.5 Da    PI: 6.5745
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf02985g01015.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26081.51.3e-25351221100
                    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                               +CaaCk+lrr+Ca++Cvlapyfp ++p kf  +h+            +lpe +r da+ss+vyeA+ar+rdPvyG++g i +lq+
  Peinf101Scf02985g01015.1  35 PCAACKILRRRCAEKCVLAPYFPPNDPIKFTTAHR------------ELPEYQRADAVSSMVYEANARLRDPVYGSAGAICQLQK 107
                               7*******************************997............89************************************ PP

                    DUF260  86 qleqlkaelallkee 100
                               q+++l+a+la++++e
  Peinf101Scf02985g01015.1 108 QVNELQAQLAKTQAE 122
                               ***********9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.03834123IPR004883Lateral organ boundaries, LOB
PfamPF031958.7E-2535120IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MESSGTTVST TTSPSLCSVS SSRNSPSPPL VVATPCAACK ILRRRCAEKC VLAPYFPPND  60
PIKFTTAHRE LPEYQRADAV SSMVYEANAR LRDPVYGSAG AICQLQKQVN ELQAQLAKTQ  120
AELVNIQCQQ ANIMALVYME MGQSPPTSPE QSLDNKSNRP GTAPSELAGR GGSRVSMESQ  180
DEQNPACSSS NPVSIESDSQ RATQANEDTD EAHPNKMMRL SSKAWSHFHV VTVNGIRCGS  240
TSTIDKVSCP TLLDGEEEPD ASSPFRVSDS SCSRLSALKP CVSTSLPNCS HCPMQCKVVK  300
NPIQLLHDCG FRHHFDSDER CQSDVLGFLD DNGVNNNGVC GFNSTHPKKP FLCLPNGSSS  360
QASKEVAKER KWTFKQSSGW KSTSNREEDD IV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-29331309118LOB family transfactor Ramosa2.1
5ly0_B1e-29331309118LOB family transfactor Ramosa2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.14e-51LOB domain-containing protein 1