PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf03038g00063.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MYB_related
Protein Properties Length: 131aa    MW: 14505.9 Da    PI: 4.2054
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf03038g00063.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.32e-092050131
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartm 31
                              rg+WT eEd llv+++  +G g+W+  a++ 
  Peinf101Scf03038g00063.1 20 RGPWTVEEDTLLVHYISHHGEGRWNILAKRA 50
                              89***********************999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.58E-81551IPR009057Homeodomain-like
PROSITE profilePS500907.3061565IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.1E-101850IPR009057Homeodomain-like
PfamPF002493.8E-82062IPR001005SANT/Myb domain
CDDcd001671.26E-62249No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MTSLSKSSSS SSDDDIGLRR GPWTVEEDTL LVHYISHHGE GRWNILAKRA EPFNISKASI  60
SECSNLIPPG DSGLNTFIKA HFPLDGESYD MDTFSPATCS FKDVLYYDQM SGENNAPGDV  120
LADSFWSMDE F
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5389493e-35AJ538949.1 Nicotiana tabacum cDNA-AFLP-fragment BT3-M23-017.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024930031.15e-20transcription factor MYB62-like
TrEMBLB9IE455e-16B9IE45_POPTR; Uncharacterized protein
STRINGPOPTR_0015s03770.18e-17(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25340.25e-13myb domain protein 116