PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf03060g00006.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family B3
Protein Properties Length: 223aa    MW: 26233 Da    PI: 10.009
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf03060g00006.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.61.9e-1238884199
                              TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                        B3 41 esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                                g++W vkl  ++    + +++GW++Fv++n+L+ g ++vFk++g++ef   v++f++
  Peinf101Scf03060g00006.1 38 FXGKKWLVKL--NG----HRFKEGWEKFVEENDLELGNILVFKHEGDMEF--EVTIFDS 88
                              2356666666..44....5599**********************999999..9999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.606189IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.7E-16391IPR015300DNA-binding pseudobarrel domain
CDDcd100177.71E-12487No hitNo description
PfamPF023622.3E-9488IPR003340B3 DNA binding domain
SuperFamilySSF1019368.44E-15491IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.8E-4889IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.3E-9142204IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.65E-7143204IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.24145218IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MHKLPIGFLK YLKGRENEHA VLRRVGKKWL VKLNGHRFXG KKWLVKLNGH RFKEGWEKFV  60
EENDLELGNI LVFKHEGDME FEVTIFDSSH CEKECELPQQ GLDEREEEKD LRRNETEKPE  120
SKIKTSVKAF SKLGATKDKH LSHPHFICII RPYCLSTTFL VIPKQFARKN KLNNRKCTIS  180
MRDEQRSWTF SLYTSGRNTY FGRGKYVGKD APGIREALDK LME
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015168741.12e-69PREDICTED: B3 domain-containing protein REM10-like
TrEMBLA0A1S4B7K87e-67A0A1S4B7K8_TOBAC; B3 domain-containing protein REM17-like
STRINGXP_009792889.12e-60(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.14e-18B3 family protein