PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf03134g00006.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family LBD
Protein Properties Length: 186aa    MW: 21299.3 Da    PI: 6.4116
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf03134g00006.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260115.92.6e-3612109197
                    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklq 84 
                               +C+aCk+lrr+C++dC++ p+fp ++p+kf +vh++FGasn++k+l++  p ++reda+ s+vyeA ar+rdP+yG+vg+i++lq
  Peinf101Scf03134g00006.1  12 PCSACKLLRRRCTQDCIFLPHFPPTEPQKFIVVHRIFGASNISKFLQQEiPMNNREDAVISMVYEASARLRDPIYGSVGIISALQ 96 
                               7*********************************************87648888******************************* PP

                    DUF260  85 qqleqlkaelall 97 
                               +++ +l++el+++
  Peinf101Scf03134g00006.1  97 KHVFHLQTELNEA 109
                               *********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.11211113IPR004883Lateral organ boundaries, LOB
PfamPF031952.2E-3712108IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MDSTNKKNKH MPCSACKLLR RRCTQDCIFL PHFPPTEPQK FIVVHRIFGA SNISKFLQQE  60
IPMNNREDAV ISMVYEASAR LRDPIYGSVG IISALQKHVF HLQTELNEAL AEAMSLRTQL  120
SYAISLPSQL EGSPFTPEDH RLHHFQKPSE QYEYDNASDA LLLLPQAADH YYCLQETEVL  180
PQPFLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-381211411112LOB family transfactor Ramosa2.1
5ly0_B3e-381211411112LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754452e-67HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBankHG9755182e-67HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016503569.11e-112PREDICTED: LOB domain-containing protein 25-like isoform X1
SwissprotQ8LBW34e-41LBD12_ARATH; LOB domain-containing protein 12
TrEMBLA0A1S4CRC51e-110A0A1S4CRC5_TOBAC; LOB domain-containing protein 25-like isoform X1
STRINGSolyc06g082770.2.18e-90(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA131471419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.12e-43LBD family protein
Publications ? help Back to Top
  1. Penfield S, et al.
    Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1.
    Plant Cell, 2004. 16(10): p. 2705-18
    [PMID:15367715]