PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf03193g00008.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family E2F/DP
Protein Properties Length: 368aa    MW: 40767.5 Da    PI: 4.4032
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf03193g00008.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP86.61.8e-2747112171
                   E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                               r+++sL+llt+kf++l++++e+g+++ln++a++L   +v  ++RRiYDi+NVLe+++liekk kn+i+wkg
  Peinf101Scf03193g00008.1  47 RYDSSLGLLTKKFINLIKHAEDGVLDLNKAADTL---EV--QKRRIYDITNVLEGIGLIEKKLKNRIQWKG 112
                               6899******************************...99..****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.5E-2945114IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.18E-1747110IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013726.2E-3547112IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023198.7E-2549112IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146607.47E-47123229No hitNo description
SuperFamilySSF1440741.1E-32125229No hitNo description
PfamPF164211.5E-32128227IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MQTPVSGKAG KAQKVPRTSK ARAASQAATS ILGSPSGNNV TPVGPCRYDS SLGLLTKKFI  60
NLIKHAEDGV LDLNKAADTL EVQKRRIYDI TNVLEGIGLI EKKLKNRIQW KGLDVSRPGE  120
VDDSVTSLQA DVENLVIEER RVDEKIREMQ ERLRDLSEDE NNQRWLFVTE DDIKSLPCFQ  180
NETLIAIKAP HGTTLEVPDP DEAVDYPQRR YRIVLRSTMG PIDVYLVSQF EEKFEEINAV  240
EAPPRLPSTS GCNENATATL PTEESRGVDS GMEEKENERV CPDVSTSQDF ASGIMKIVPD  300
VDNEADYWLL SDAANISITD MWRTESVLDW SELNAIHDDY SMANVSTPRA QTPPSSTTEL  360
PSANTSGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A4e-2742113274PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA cooperatively with DP proteins through the E2 recognition site, 5'-TTTC[CG]CGC-3' found in the promoter region of a number of genes whose products are involved in cell cycle regulation or in DNA replication. The binding of retinoblastoma-related proteins represses transactivation. Involved in the control of cell-cycle progression from G1 to S phase and from G2 to M phase. Stimulates cell proliferation and delays differentiation. Represses cell enlargement and endoreduplication in auxin-free conditions. {ECO:0000269|PubMed:11669580, ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11862494, ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:12913157, ECO:0000269|PubMed:16055635, ECO:0000269|PubMed:16514015}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by light and by auxin. May be up-regulated by E2FA. {ECO:0000269|PubMed:16055635, ECO:0000269|PubMed:16514015, ECO:0000269|PubMed:18424613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0253470.0AB025347.1 Nicotiana tabacum mRNA for transcription factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009800733.10.0PREDICTED: transcription factor E2FB-like isoform X2
RefseqXP_016473683.10.0PREDICTED: transcription factor E2FB-like
SwissprotQ9FV711e-149E2FB_ARATH; Transcription factor E2FB
TrEMBLA0A1S4AAL50.0A0A1S4AAL5_TOBAC; transcription factor E2FB-like
TrEMBLA0A1U7YC730.0A0A1U7YC73_NICSY; transcription factor E2FB-like isoform X2
STRINGXP_009800726.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10772484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22220.21e-152E2F transcription factor 1
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Wu M,Liu L,Hijazi H,Chan C
    A multi-layer inference approach to reconstruct condition-specific genes and their regulation.
    Bioinformatics, 2013. 29(12): p. 1541-52
    [PMID:23610368]
  3. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]