PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf03448g00003.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family GRAS
Protein Properties Length: 751aa    MW: 84862.1 Da    PI: 5.3134
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf03448g00003.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS369.44.8e-1133777481373
                      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                               l++lL++cA+ v+++d + a++ L+++++++sp+gd+ qRla++f+ +L+arla+++++ly+al+p++ +    +e+l+a++++ 
  Peinf101Scf03448g00003.1 377 LRTLLISCAQSVAADDRRTANEQLKQIRQHSSPTGDAYQRLASVFADGLEARLAGTGTQLYAALAPKRIT---AAEKLKAYQAYL 458
                               6789***************************************************************999...9*********** PP

                      GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakf 168
                                 +P+ k++ + aN++I   +++ +++H+iDf+i++G+QWp L+q L++ p+gpp+lRiTg++ p++g   +e+le+tg+rLak+
  Peinf101Scf03448g00003.1 459 SSCPFKKIAIFFANKMIFHTASNGRTLHVIDFGIQYGFQWPILIQLLSQIPGGPPKLRITGIDLPQPGfrPAESLEKTGSRLAKY 543
                               *******************************************************************9***************** PP

                      GRAS 169 AeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesF 253
                               +e++ vpfe+n+++a+++e++++e+L++ +gE++aVn+ ++ ++llde+v ++s rd+vL+l+++++P+++v +  + +++s+ F
  Peinf101Scf03448g00003.1 544 CERFSVPFEYNAIAAQNWESIRIEDLKLASGECVAVNCLFRFKNLLDETVVVDSSRDAVLRLIRKMNPDIFVQAVINGSYSSPFF 628
                               ************************************************************************************* PP

                      GRAS 254 lerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqak 338
                               ++rf eal yys+lfd+++a+l+r++++r   E+e+ +re++nv+aceg+er+er et+++W+ r ++aGFk +pl+++ +++ +
  Peinf101Scf03448g00003.1 629 VTRFREALFYYSTLFDMFDATLSRDDQQRFHFEQEFYKREAMNVIACEGSERVERPETYKQWQVRNMRAGFKLLPLNQQLMQKLR 713
                               ************************************************************************************* PP

                      GRAS 339 lllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                               + ++  +++ +  +e+  ++++gWk+r + + S+W
  Peinf101Scf03448g00003.1 714 CKVKDGYKKDFVFDEDGSWMLQGWKGRVVCASSCW 748
                               *******999************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.357351729IPR005202Transcription factor GRAS
PfamPF035141.7E-110377748IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 751 aa     Download sequence    Send to blast
MDPRFIPLPD QVDTFAVEDL FNLSSFEESL NHPLSNKDDY VAFGVPYNTS SPDISNFALS  60
SNVSSEVDSP DDHDSDSLFK YLNQILMEEN IEDKPSMFHD PLALKAAEKS FYEALGKTYP  120
PSPFRTPDNV EHQLESPDSI FWNSTEHSTS SSNTGSNSTD HQSIIDPGES RLPMWSHPSE  180
NSIKPLLHSN SERSHGSLNN FNNSNSHMDS SVNPNVVPNV FTDSESILQF KRGMEEASKF  240
LPNLSQFVID LDKYTFPPKM EEVTKEAVVK VEKDEKNHSP NGTKGRKHQY PEDSDYEDER  300
NNKQSAIYVE EEVELSEMFD KVLLCTDKGE TFCGGDVKLE MSSEVDKSSV QNGLAHGSNG  360
GKNRAKKQGT KNEAVDLRTL LISCAQSVAA DDRRTANEQL KQIRQHSSPT GDAYQRLASV  420
FADGLEARLA GTGTQLYAAL APKRITAAEK LKAYQAYLSS CPFKKIAIFF ANKMIFHTAS  480
NGRTLHVIDF GIQYGFQWPI LIQLLSQIPG GPPKLRITGI DLPQPGFRPA ESLEKTGSRL  540
AKYCERFSVP FEYNAIAAQN WESIRIEDLK LASGECVAVN CLFRFKNLLD ETVVVDSSRD  600
AVLRLIRKMN PDIFVQAVIN GSYSSPFFVT RFREALFYYS TLFDMFDATL SRDDQQRFHF  660
EQEFYKREAM NVIACEGSER VERPETYKQW QVRNMRAGFK LLPLNQQLMQ KLRCKVKDGY  720
KKDFVFDEDG SWMLQGWKGR VVCASSCWVP A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-483607501379Protein SCARECROW
5b3h_D3e-483607501379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009606498.10.0PREDICTED: scarecrow-like protein 14
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A1S4BAP20.0A0A1S4BAP2_TOBAC; scarecrow-like protein 14
STRINGXP_009606498.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27624191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]