PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf03539g00026.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family B3
Protein Properties Length: 181aa    MW: 20696.3 Da    PI: 7.149
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf03539g00026.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.47.2e-20761521796
                               E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS
                        B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 
                                +p +fa+e+   +++s  + l+d +g++W+v +   +++++++l+kGW +Fv++n L+++D++vF+l+++ +  el++kv
  Peinf101Scf03539g00026.1  76 NIPTEFAREYI--PKTSNVIELQDCDGNKWNVCC--IRRKDQIYLGKGWLNFVRDNSLEVRDVCVFELIKElQADELMLKV 152
                               69********5..336679***************..899999*************************99887777766554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.6260158IPR003340B3 DNA binding domain
SuperFamilySSF1019369.42E-2464157IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.3E-1267158IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.1E-2473157IPR015300DNA-binding pseudobarrel domain
PfamPF023627.4E-1877156IPR003340B3 DNA binding domain
CDDcd100172.41E-2477156No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
PNQDNAREGS KNDTLQRNES KQTSSDVFGP VSSNRTNCND TSKSFAGQQL EKSVSHVYNL  60
TFFLCTCFKT CPNLQNIPTE FAREYIPKTS NVIELQDCDG NKWNVCCIRR KDQIYLGKGW  120
LNFVRDNSLE VRDVCVFELI KELQADELML KVHIFRARVE QNATTSLDTL VAYLNQLSIS  180
K
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009613233.13e-46PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A1S4CJK22e-44A0A1S4CJK2_TOBAC; B3 domain-containing transcription factor VRN1-like
STRINGXP_009613233.11e-45(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA85571529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-10B3 family protein