PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf03555g00019.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family NAC
Protein Properties Length: 353aa    MW: 40705.3 Da    PI: 6.9955
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf03555g00019.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM178.81.4e-5571311129
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                               +ppGfrFhPtdeelv++yL+kkv++++++l +vik+vd+yk+ePwdL+   ++e++ewyfFs++dkky+tg+r+nrat++g+Wka
  Peinf101Scf03555g00019.1   7 VPPGFRFHPTDEELVDYYLRKKVTSRRIDL-DVIKDVDLYKIEPWDLQ--GTEEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKA 88 
                               69****************************.9***************8..345789***************************** PP

                       NAM  86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                               tg+dk ++s k+ l+g++ktLvfykgrap+g+k+dW+mheyrle
  Peinf101Scf03555g00019.1  89 TGRDKGIYS-KHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 131
                               *********.8899****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.4E-605151IPR003441NAC domain
PROSITE profilePS5100559.2257151IPR003441NAC domain
PfamPF023656.2E-298130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048759Biological Processxylem vessel member cell differentiation
GO:1901348Biological Processpositive regulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MNSFSHVPPG FRFHPTDEEL VDYYLRKKVT SRRIDLDVIK DVDLYKIEPW DLQGTEEQNE  60
WYFFSHKDKK YPTGTRTNRA TAAGFWKATG RDKGIYSKHD LIGMRKTLVF YKGRAPNGQK  120
SDWIMHEYRL ETDPNGAPQA KGWVVCRVFK KKIATMRRES EHESPIWYDD HVSFMPEIDS  180
PKQHSQSSLT YHYPNYPCKK ELDNLHYQIP PDHHQQQQFL QLPLLETPKF LPAPPSINCS  240
SMPVFGINFN NHGSSLPQSS VLTGEHVHPM YGNNNNSTNN TNEQLADQVT DWRVLDKFVA  300
SQLSQEEVIS KENDYSNAAN TLHGHGNTNL NKQETATENT STASSCSQID LWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-48715217166NO APICAL MERISTEM PROTEIN
1ut4_B5e-48715217166NO APICAL MERISTEM PROTEIN
1ut7_A5e-48715217166NO APICAL MERISTEM PROTEIN
1ut7_B5e-48715217166NO APICAL MERISTEM PROTEIN
4dul_A5e-48715217166NAC domain-containing protein 19
4dul_B5e-48715217166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00136DAPTransfer from AT1G12260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755152e-94HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019258894.10.0PREDICTED: NAC domain-containing protein 7-like
SwissprotQ9FWX21e-135NAC7_ARATH; NAC domain-containing protein 7
TrEMBLA0A314LF710.0A0A314LF71_NICAT; Nac domain-containing protein 7
STRINGXP_009791743.11e-180(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13424297
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.11e-114NAC 007
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]