PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf03556g00038.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MIKC_MADS
Protein Properties Length: 193aa    MW: 22257 Da    PI: 10.4597
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf03556g00038.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.19.9e-283989151
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                              k+ien+  rqvtfskRr+g+lKKA+EL +LCdaev vi+fs+tgklye++s
  Peinf101Scf03556g00038.1 39 KKIENTNSRQVTFSKRRQGLLKKAKELAILCDAEVGVIVFSNTGKLYEFAS 89
                              68***********************************************86 PP
2K-box62.51.6e-211141841080
                     K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieel 80 
                                +a+   +q e++ Lk+e+ +L++ qR+l+G++Le L++keLqqLe+qL +++  +++kK++llleq+e++
  Peinf101Scf03556g00038.1 114 VAAEKHGSQPEVNALKAEVVTLRQLQRRLMGKELEGLNFKELQQLEHQLTEGILAVKDKKEQLLLEQLEKS 184
                               4555667999**********************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.8753191IPR002100Transcription factor, MADS-box
SMARTSM004322.8E-403190IPR002100Transcription factor, MADS-box
CDDcd002658.89E-4132107No hitNo description
SuperFamilySSF554554.84E-3232107IPR002100Transcription factor, MADS-box
PROSITE patternPS0035003387IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-283353IPR002100Transcription factor, MADS-box
PfamPF003192.7E-264087IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-285368IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-286889IPR002100Transcription factor, MADS-box
PROSITE profilePS5129710.582118193IPR002487Transcription factor, K-box
PfamPF014865.1E-15120183IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MNHPHKKIKG FLFLFIFSNQ KEKRKQRKGK MGRGRIEMKK IENTNSRQVT FSKRRQGLLK  60
KAKELAILCD AEVGVIVFSN TGKLYEFASS SMEHILARYD KAPESSELTT IETVAAEKHG  120
SQPEVNALKA EVVTLRQLQR RLMGKELEGL NFKELQQLEH QLTEGILAVK DKKEQLLLEQ  180
LEKSLLKVYF CVR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-2031110180MEF2C
5f28_B2e-2031110180MEF2C
5f28_C2e-2031110180MEF2C
5f28_D2e-2031110180MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the negative regulation of flowering, probably through the photoperiodic pathway. Prevents premature flowering. Downstream regulator of a subset of the MIKC* MADS-controlled genes required during pollen maturation. {ECO:0000269|PubMed:17521410, ECO:0000269|PubMed:18034896, ECO:0000269|PubMed:18799658}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019223417.12e-88PREDICTED: MADS-box transcription factor 23-like isoform X1
SwissprotQ9M2K81e-47AGL18_ARATH; Agamous-like MADS-box protein AGL18
TrEMBLA0A314KZ676e-87A0A314KZ67_NICAT; Agamous-like mads-box protein agl15
STRINGXP_009758657.12e-87(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57390.12e-40AGAMOUS-like 18