PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf03684g00004.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family LBD
Protein Properties Length: 201aa    MW: 22440.4 Da    PI: 4.6894
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf03684g00004.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260120.97.2e-3871071100
                    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 
                               +C aCk+lrr+C+++C++apyf+ eq +++fa+vhk+FGasnv+kll +lp + r++a+ ++ yeA ar++dPvyG+vg+i +lq
  Peinf101Scf03684g00004.1   7 SCGACKFLRRRCSSECIFAPYFCYEQaSNNFAAVHKVFGASNVSKLLVHLPLHCRSEAAITISYEALARMHDPVYGCVGHIYALQ 91 
                               6***********************9978********************************************************* PP

                    DUF260  85 qqleqlkaelallkee 100
                               qq+++l +e++ ++++
  Peinf101Scf03684g00004.1  92 QQVDSLIEEIEFIGNQ 107
                               ********99988776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.636108IPR004883Lateral organ boundaries, LOB
PfamPF031952.7E-357102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MTIPGSSCGA CKFLRRRCSS ECIFAPYFCY EQASNNFAAV HKVFGASNVS KLLVHLPLHC  60
RSEAAITISY EALARMHDPV YGCVGHIYAL QQQVDSLIEE IEFIGNQMAI CASEVPMQNT  120
INTLQYPPEC LNMKVEVNNT NHSISSLAHF NDTSITAAFD IQINAELPEL NEFDYSFSNP  180
FYDLEISERV FNGADSLINL H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-3351029105LOB family transfactor Ramosa2.1
5ly0_B4e-3351029105LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:17259263}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009757428.11e-103PREDICTED: LOB domain-containing protein 33-like
RefseqXP_016488257.11e-103PREDICTED: LOB domain-containing protein 33-like
SwissprotQ9LHS89e-54LBD33_ARATH; LOB domain-containing protein 33
TrEMBLA0A1S4BHD41e-102A0A1S4BHD4_TOBAC; LOB domain-containing protein 33-like
TrEMBLA0A1U7UT891e-102A0A1U7UT89_NICSY; LOB domain-containing protein 33-like
STRINGXP_009757428.11e-102(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA127691521
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.14e-56LOB domain-containing protein 33
Publications ? help Back to Top
  1. Bargmann BO,Birnbaum KD,Brenner ED
    An undergraduate study of two transcription factors that promote lateral root formation.
    Biochem Mol Biol Educ, 2014 May-Jun. 42(3): p. 237-45
    [PMID:24615800]