PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf03880g00008.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family YABBY
Protein Properties Length: 187aa    MW: 20708.4 Da    PI: 8.9041
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf03880g00008.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY2421.2e-7471653170
                     YABBY   3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnve 87 
                                +ssse+vCyv+CnfCntilavsvP +s++++vtvrCGhC++llsvn+    q l+ ++hl+++         +++  + + +v 
  Peinf101Scf03880g00008.1   7 YMSSSERVCYVNCNFCNTILAVSVPCSSMMTIVTVRCGHCANLLSVNIGSLLQSLPLQNHLQQRQ--------QSNIADASNKVC 83 
                               6799*******************************************************965544........444444455566 PP

                     YABBY  88 keesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                                ++s+++s++ + +  n++e+ pr  p irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl
  Peinf101Scf03880g00008.1  84 GSSSSTNSHRLSPIAANSEEDQPRNSP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 165
                               6777788888889999********999.9****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046907.3E-7510165IPR006780YABBY protein
SuperFamilySSF470957.46E-9106159IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.103.5E-5113159IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
GO:0010158Biological Processabaxial cell fate specification
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MSLDMTYMSS SERVCYVNCN FCNTILAVSV PCSSMMTIVT VRCGHCANLL SVNIGSLLQS  60
LPLQNHLQQR QQSNIADASN KVCGSSSSTN SHRLSPIAAN SEEDQPRNSP IRPPEKRQRV  120
PSAYNRFIKE EIQRIKASNP DISHREAFST AAKNWAHFPH IHFGLNKQAK LDHAVTGEGP  180
QKSIGLY
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009611999.11e-115PREDICTED: putative axial regulator YABBY 2 isoform X3
SwissprotQ9XFB05e-72YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBLA0A1J6KYN51e-114A0A1J6KYN5_NICAT; Putative axial regulator yabby 2
STRINGXP_009792033.11e-111(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38124163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.12e-74YABBY family protein
Publications ? help Back to Top
  1. Sacharowski SP, et al.
    SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development.
    Plant Cell, 2015. 27(7): p. 1889-906
    [PMID:26106148]