PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf04017g01014.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

LBD

Protein Properties

Length: 244aa MW: 26244.7 Da PI: 7.3173

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf04017g01014.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	94.3	1.4e-29	4	107	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80 +C++C+vlr++C+++C + p++ p++q++++ +++k++G++ +++l+++ pe+ r+ +++sl+yeA+ r+ +P+yG++g++ Peinf101Scf04017g01014.1 4 SCNGCRVLRKGCSENCSIKPCLqwiksPEAQSNATLFLAKFYGRAGLINLINSGPEHLRPGIFRSLLYEACGRIVNPIYGSTGLL 88 6********************************************************************************** PP DUF260 81 lklqqqleqlkaelallke 99 +++++ql+q+++e++l ++ Peinf101Scf04017g01014.1 89 TSGNWQLCQAAVEAVLSGA 107 ***********998766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.879	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.8E-24	4	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MRLSCNGCRV LRKGCSENCS IKPCLQWIKS PEAQSNATLF LAKFYGRAGL INLINSGPEH 60 LRPGIFRSLL YEACGRIVNP IYGSTGLLTS GNWQLCQAAV EAVLSGAPIV KLSPDSAAAN 120 DTAMISPSLK ACDIRHVSKE SNSASPDLHK VKTRAKFKRV SAQPKKQSAE IDDAARVMLS 180 WCNREEEIGS PSHDSGLSQQ HTEEPSRGES ADVDSGSVET VEASLTKLDE SDVGLELTLG 240 LCSR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004235815.1	1e-136	LOB domain-containing protein 40
Swissprot	Q9M886	2e-79	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A3Q7FWA6	1e-135	A0A3Q7FWA6_SOLLC; Uncharacterized protein
STRING	Solyc03g119530.2.1	1e-135	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA886	24	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	7e-82	LOB domain-containing protein 41