PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf04103g00048.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

MYB_related

Protein Properties

Length: 176aa MW: 19256.8 Da PI: 10.5928

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf04103g00048.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	41.8	2.6e-13	5	56	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 + +WT eE+e l+ +++++G+g WktI + + +R+ ++k++w++ Peinf101Scf04103g00048.1 5 KVKWTREEEEALKAGIAKHGTGKWKTILNDPQfasllSNRSNIDLKDKWRNM 56 579********************************9**********95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.235	1	61	IPR017930	Myb domain
SuperFamily	SSF46689	1.94E-16	2	59	IPR009057	Homeodomain-like
SMART	SM00717	2.4E-7	4	59	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.9E-14	5	56	IPR009057	Homeodomain-like
Pfam	PF00249	1.4E-9	5	56	IPR001005	SANT/Myb domain
CDD	cd11660	2.00E-21	6	57	No hit	No description
SMART	SM00526	9.8E-15	111	176	IPR005818	Linker histone H1/H5, domain H15
Gene3D	G3DSA:1.10.10.10	6.7E-13	112	175	IPR011991	Winged helix-turn-helix DNA-binding domain
PROSITE profile	PS51504	21.947	113	176	IPR005818	Linker histone H1/H5, domain H15
SuperFamily	SSF46785	8.16E-13	114	175	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00538	2.4E-10	115	174	IPR005818	Linker histone H1/H5, domain H15
CDD	cd00073	1.41E-11	115	173	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006334	Biological Process	nucleosome assembly
GO:0000786	Cellular Component	nucleosome
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MGNPKVKWTR EEEEALKAGI AKHGTGKWKT ILNDPQFASL LSNRSNIDLK DKWRNMNCTA 60 AQGPKDNSGV ARARPVTIGA LGPSTAQRSV PITSVSKNEA VDDSPKSPQE GKNAPTYSDM 120 IFEALSSMKG SNGSDLGAIV GFIEHRHEVP QNFRKSLSSK LRRLVLQGKL ERVNNF

Functional Description ? help Back to Top
Source	Description
UniProt	Binds preferentially double-stranded telomeric repeats. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009616026.1	7e-90	PREDICTED: telomere repeat-binding factor 4
Refseq	XP_016510058.1	7e-90	PREDICTED: telomere repeat-binding factor 4-like
Swissprot	F4IEY4	2e-48	TRB5_ARATH; Telomere repeat-binding factor 5
TrEMBL	A0A1S4D9K5	2e-88	A0A1S4D9K5_TOBAC; telomere repeat-binding factor 4-like
STRING	XP_009616026.1	3e-89	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2504	23	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G17520.1	4e-47	MYB_related family protein

Publications ? help Back to Top
Kotliński M, et al. Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain. Plant Physiol., 2017. 174(1): p. 27-34 [PMID:28298478]