PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf04117g00005.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family GATA
Protein Properties Length: 255aa    MW: 28825.7 Da    PI: 8.9492
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf04117g00005.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.51.9e-18182215134
                      GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                               Cs+C + kTp+WR gp g+ktLCnaCG++y++ +
  Peinf101Scf04117g00005.1 182 CSHCLAQKTPQWRAGPLGPKTLCNACGVRYKSGR 215
                               *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.176176212IPR000679Zinc finger, GATA-type
SMARTSM004014.4E-14176226IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.57E-15178239No hitNo description
Gene3DG3DSA:3.30.50.102.9E-14179213IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.18E-12181232No hitNo description
PROSITE patternPS003440182207IPR000679Zinc finger, GATA-type
PfamPF003204.5E-16182215IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MDYCHNFILS EDLHSDYHQK CQPEQLLDNT LDDLFSSHTT TEGDVSLEWL SVFVEDCLTS  60
TGSCLPPPAH EASSSSPMKK NKLTPSGFLH KFVIPGKARS KRKRRTPLAQ KTKNRTFFCS  120
WPKIHKNQVG VVPFLDPPLL QQAYWLADSE LIIMPENNEE SKNSNVKKED DGNNGLQQGR  180
RCSHCLAQKT PQWRAGPLGP KTLCNACGVR YKSGRLFPEY RPAKSPTFLS YKHSNSHKKV  240
LEMRSMANST TTNSD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012070476.15e-80GATA transcription factor 7
TrEMBLA0A067KXQ61e-78A0A067KXQ6_JATCU; Uncharacterized protein
STRINGcassava4.1_013059m8e-79(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1515558
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.15e-36GATA transcription factor 12