PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf04348g00006.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

bHLH

Protein Properties

Length: 458aa MW: 50587.3 Da PI: 6.734

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf04348g00006.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18	5.1e-06	323	362	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Peinf101Scf04348g00006.1 323 RREKISQRMKLLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 362 9***************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.166	311	361	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.0E-4	317	367	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.53E-12	322	379	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.30E-6	323	366	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.3E-12	324	379	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence Send to blast
MDKDYFSNGA ILPPLQFEPM IPLSSLHSNQ ELNSISVQSS NSFPNTHWDN NSTDQYTHFN 60 SALSSIVSSP VASNSLNSNS LGLQELIGKL GTICSPYDNS NINNNINSDS TMTSCYTTPL 120 NSPPKLHIPI IDQLGKSNIS ILGKAIPMNP ASFPNHSADP RFTHRAEKFS CLGSRSFNDR 180 TSQAGLNNEN LPRVSSSPSL KKIGSPIQNQ NLGQLHVEKN CARIERNANC NEESSVSEQI 240 PSEISSRKRK AVSRGKGKKS GKSLVGNVVE AEDGTXDGTR EKRSKSTEDK MEESKGSEGD 300 ETEKEAKEKE KVVEPPKDYI HVRREKISQR MKLLQDLVPG CNKVTGKAVM LDEIINYVQS 360 LQRQVEFLSM KLASVNPRLD LHIDNLLPKD ICQLNGSLSQ HVPLNGYGDN LTQFPTICED 420 DLQSIVQMGF SQNSNQDLTL HSQTFSVPNS TSYMKIEM

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence Send to blast

MDKDYFSNGA ILPPLQFEPM IPLSSLHSNQ ELNSISVQSS NSFPNTHWDN NSTDQYTHFN  60
SALSSIVSSP VASNSLNSNS LGLQELIGKL GTICSPYDNS NINNNINSDS TMTSCYTTPL  120
NSPPKLHIPI IDQLGKSNIS ILGKAIPMNP ASFPNHSADP RFTHRAEKFS CLGSRSFNDR  180
TSQAGLNNEN LPRVSSSPSL KKIGSPIQNQ NLGQLHVEKN CARIERNANC NEESSVSEQI  240
PSEISSRKRK AVSRGKGKKS GKSLVGNVVE AEDGTXDGTR EKRSKSTEDK MEESKGSEGD  300
ETEKEAKEKE KVVEPPKDYI HVRREKISQR MKLLQDLVPG CNKVTGKAVM LDEIINYVQS  360
LQRQVEFLSM KLASVNPRLD LHIDNLLPKD ICQLNGSLSQ HVPLNGYGDN LTQFPTICED  420
DLQSIVQMGF SQNSNQDLTL HSQTFSVPNS TSYMKIEM

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016506308.1	1e-176	PREDICTED: transcription factor bHLH62-like isoform X1
TrEMBL	A0A1S4CYT5	1e-174	A0A1S4CYT5_TOBAC; transcription factor bHLH62-like isoform X1
STRING	XP_009596972.1	1e-174	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1057	23	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	3e-55	bHLH family protein