PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf04394g00020.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family bHLH
Protein Properties Length: 215aa    MW: 23570.5 Da    PI: 7.1662
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf04394g00020.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.72.1e-13150195655
                               HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               +++Er RR ri +++ +L+el+P+     +k  + a++Le+AveY+k Lq
  Peinf101Scf04394g00020.1 150 SIAERVRRTRISDRIRKLQELVPNM----DKQTNTADMLEEAVEYVKFLQ 195
                               689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.958144194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.13E-16147205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.98E-13148199No hitNo description
Gene3DG3DSA:4.10.280.107.7E-17149207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-13150200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-10150195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042335Biological Processcuticle development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MQRGTTGGGG GGGLSRYRSA PATWLEALLE SDTENEQVPI SHTTTPSKPP PHPSTQHQLP  60
DLKPATGGFA ADLGLFESGV SNNFLRQNSS PADFLAHISS DAACVWEKGE PSGKLHGSGG  120
SMDAEMEKLM EDLVPCKVRA KRGCATHPRS IAERVRRTRI SDRIRKLQEL VPNMDKQTNT  180
ADMLEEAVEY VKFLQKQIQE LTEHQKKCTC SMKDQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00181DAPTransfer from AT1G35460Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754458e-46HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBankHG9755188e-46HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006356502.11e-107PREDICTED: transcription factor bHLH81-like
SwissprotQ9C8P86e-55BH080_ARATH; Transcription factor bHLH80
TrEMBLM1D3H51e-106M1D3H5_SOLTU; Uncharacterized protein
STRINGXP_009788006.11e-106(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA117871923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.15e-45bHLH family protein