PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf04560g00016.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

MYB_related

Protein Properties

Length: 164aa MW: 18689.2 Da PI: 4.124

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf04560g00016.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.8	1.2e-08	14	43	1	30
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIart 30 rg+W++ Ed++l++++ ++G ++W+ ++ Peinf101Scf04560g00016.1 14 RGPWSKKEDDILINYIDKHGHPNWRQLPKL 43 89**********************998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.0E-11	5	43	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.35E-7	9	43	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.876	9	42	IPR017877	Myb-like domain
Pfam	PF00249	2.8E-6	14	43	IPR001005	SANT/Myb domain
CDD	cd00167	3.76E-4	16	42	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MGRTPCCEKL GLNRGPWSKK EDDILINYID KHGHPNWRQL PKLAEKSEMS SPKPNSNNQH 60 EPNCSSSSIT SSSEGSCSNT TATGSHVDES RDQMNLDNLL EVDDNFWSEV LWATPADDSK 120 DYNPDFSLSS QEENYELNSN LNDNWLWDDL FSRANEFLLE FPDL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009770485.1	4e-38	PREDICTED: myb-related protein Myb4-like
TrEMBL	A0A1U7W8B2	8e-37	A0A1U7W8B2_NICSY; myb-related protein Myb4-like
STRING	XP_009770485.1	1e-37	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA17103	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06180.1	5e-21	myb domain protein 13