PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf04726g00008.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

FAR1

Protein Properties

Length: 492aa MW: 55545.3 Da PI: 8.9271

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf04726g00008.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	26	3e-08	86	162	1	78
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwev 78 +fY+++Ak+ GFs++k++ kk+ ++ + it r++ C k gk+++ +++ k++ + + C+ +l+ +++ d+ + + Peinf101Scf04726g00008.1 86 DFYQDHAKKHGFSITKRSCKKQsSEYDLITGRRLSCHKAGKPARYQTS--KKEFEGRWAQFICDPRLRENQWLDDIYSI 162 6************99998875777889***********998877..66666777777777777766666666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.7E-6	86	162	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	10.435	267	305	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0042	280	307	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 492 aa Download sequence Send to blast
MQSFMDVEES SSNSQAGPGN TASVLSQVLG VHQDDSLFNN RSNSSMAGEN NDPNVATGEG 60 PGINPRAPAG GPTVGMKFPS LEAMVDFYQD HAKKHGFSIT KRSCKKQSSE YDLITGRRLS 120 CHKAGKPARY QTSKKEFEGR WAQFICDPRL RENQWLDDIY SIRSQWVPVY LTDTFWAGMR 180 STQRSESMHA FFDQFITSRT NLLTFVMQYE WEEQLRAGLT RNIYDMHRKQ IQDSIGCNFV 240 GFNVQDEVET FSVSDTGMGL NYAGTEYIMT VVYKRDGQYL DCTCKLFNTR GIICRHMILV 300 VKYHQMPELN ERYIMRRWRG DISRPHLWAY VPEGYPQMSD EFKRLHGLKG IFYKCAERAI 360 QSDKLTRKLG LELVASFGKP NNDDPVPDDI HDVEDHRSDV PILDPRFLRS KGRPCLIRVR 420 NNWNRRQRRY GTSRRGWGRS RAGDAGAGRG SGGVNASNGN GGVDASRGNA AVDATTACGN 480 SGVDARRGNC TI

Sequence ? help Back to Top

Protein Sequence Length: 492 aa Download sequence Send to blast

MQSFMDVEES SSNSQAGPGN TASVLSQVLG VHQDDSLFNN RSNSSMAGEN NDPNVATGEG  60
PGINPRAPAG GPTVGMKFPS LEAMVDFYQD HAKKHGFSIT KRSCKKQSSE YDLITGRRLS  120
CHKAGKPARY QTSKKEFEGR WAQFICDPRL RENQWLDDIY SIRSQWVPVY LTDTFWAGMR  180
STQRSESMHA FFDQFITSRT NLLTFVMQYE WEEQLRAGLT RNIYDMHRKQ IQDSIGCNFV  240
GFNVQDEVET FSVSDTGMGL NYAGTEYIMT VVYKRDGQYL DCTCKLFNTR GIICRHMILV  300
VKYHQMPELN ERYIMRRWRG DISRPHLWAY VPEGYPQMSD EFKRLHGLKG IFYKCAERAI  360
QSDKLTRKLG LELVASFGKP NNDDPVPDDI HDVEDHRSDV PILDPRFLRS KGRPCLIRVR  420
NNWNRRQRRY GTSRRGWGRS RAGDAGAGRG SGGVNASNGN GGVDASRGNA AVDATTACGN  480
SGVDARRGNC TI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	419	428	RNNWNRRQRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7498	2	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	4e-25	FAR1-related sequence 6