PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf05020g00039.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family B3
Protein Properties Length: 163aa    MW: 18821.1 Da    PI: 4.7869
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf05020g00039.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.62.6e-141098498
                              E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                        B3  4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90
                              v + ++v   ++l+lp +f++ehg     + t++l  ++   W+v l  +k ++ ++l +GW+eF + + ++    ++F++  +s+f
  Peinf101Scf05020g00039.1 10 VIVEPSVIDDRQLRLPDQFVQEHGDG--LQDTVRLIVPTDDFWNVGL--KKVGKLIWLHDGWQEFMEHHSIERYYLLTFEYGPNSCF 92
                              5678999999*************654..5669***************..999888**************************988*** PP

                              ..EEEEE- CS
                        B3 91 elvvkvfr 98
                                +v++f+
  Peinf101Scf05020g00039.1 93 --KVHIFD 98
                              ..999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.2E-18699IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-19699IPR015300DNA-binding pseudobarrel domain
CDDcd100174.31E-15798No hitNo description
SMARTSM010196.3E-117100IPR003340B3 DNA binding domain
PROSITE profilePS5086310.9267100IPR003340B3 DNA binding domain
PfamPF023623.5E-111098IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MELCSTCFYV IVEPSVIDDR QLRLPDQFVQ EHGDGLQDTV RLIVPTDDFW NVGLKKVGKL  60
IWLHDGWQEF MEHHSIERYY LLTFEYGPNS CFKVHIFDLT AAEIHYQLRS HGNAKLQDIN  120
QDLSHGKEKI VGHDDGESSV EIVDPWETDE QGPEGAKRRK IAA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006357562.12e-74PREDICTED: B3 domain-containing transcription factor VRN1-like
RefseqXP_025888129.12e-77B3 domain-containing protein At4g01580-like isoform X2
TrEMBLA0A3Q7IL701e-75A0A3Q7IL70_SOLLC; Uncharacterized protein
STRINGSolyc08g068540.2.14e-74(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA85571529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.13e-27B3 family protein