PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf05410g00023.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family Trihelix
Protein Properties Length: 488aa    MW: 53003.3 Da    PI: 9.8044
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf05410g00023.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix92.73.7e-2968151186
                  trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                               rW++qe+laL+++r+em+  +r+++lk+plWeevs+k+++ g++rs+k+Ckek+en+ k+++++k+g+ +++  + +t+++f+ l
  Peinf101Scf05410g00023.1  68 RWPRQETLALLRIRSEMDVVFRDSSLKGPLWEEVSRKLADLGYHRSAKKCKEKFENVYKYHRRTKDGRASKS--DGKTYRFFEAL 150
                               8********************************************************************974..5567*****99 PP

                  trihelix  86 e 86 
                               e
  Peinf101Scf05410g00023.1 151 E 151
                               8 PP
2trihelix102.82.7e-32373458187
                  trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                               rW+k+e+ aLi++r+ ++ +++++  k+plWee+s+ mr  g++r++k+Ckekwen+nk+ykk+ke++kkr +e+s+tcpyf+ql
  Peinf101Scf05410g00023.1 373 RWPKEEIEALIRLRTCLDLKYQENVPKGPLWEEISAGMRNLGYNRNAKRCKEKWENINKYYKKVKESNKKR-PEDSKTCPYFHQL 456
                               8*********************************************************************8.99*********** PP

                  trihelix  86 ea 87 
                               ea
  Peinf101Scf05410g00023.1 457 EA 458
                               85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.1261125IPR017877Myb-like domain
SMARTSM007170.002365127IPR001005SANT/Myb domain
CDDcd122035.93E-2767132No hitNo description
PfamPF138377.6E-1967152No hitNo description
PROSITE profilePS500907.457366430IPR017877Myb-like domain
SMARTSM007170.0015370432IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-4371429IPR009057Homeodomain-like
PfamPF138371.9E-22372459No hitNo description
CDDcd122035.91E-31372437No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MLGVSAGLIN TTSADGAAST QAAPQQPPLA ATVAESGGSS EGGGGGGGDM AVGGGFNEEG  60
ERNSGGNRWP RQETLALLRI RSEMDVVFRD SSLKGPLWEE VSRKLADLGY HRSAKKCKEK  120
FENVYKYHRR TKDGRASKSD GKTYRFFEAL EAFETNPSHS LPPPPLAATP ITMAMPMRGN  180
ATMNNPPMPM SQTTVSTVSS TQIPFTISQN TVPTAATPIV NHPLNNNVSP LPVSSQPSQP  240
PPPAQPNITL NQINRAQDAT IIAFLQKITG QQNIQIPNIT TNTSPTQIQL QEKPLVAPPQ  300
SQPQKQTQTP PPPPATAVSL PMPVPAPAIA VSLPMPVPAP LPTQALVPVP ARTMEVAKLD  360
NGGENFTQAS SSRWPKEEIE ALIRLRTCLD LKYQENVPKG PLWEEISAGM RNLGYNRNAK  420
RCKEKWENIN KYYKKVKESN KKRPEDSKTC PYFHQLEALY KEKAKTEVVP ITTTAFGLKP  480
ENNPSMVP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754433e-44HG975443.1 Solanum pennellii chromosome ch04, complete genome.
GenBankHG9755163e-44HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018851634.11e-123PREDICTED: trihelix transcription factor GT-2-like
SwissprotQ391172e-48TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A2I4H6601e-122A0A2I4H660_JUGRE; trihelix transcription factor GT-2-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24022459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.23e-47Trihelix family protein