PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf05424g00017.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family E2F/DP
Protein Properties Length: 301aa    MW: 33886.3 Da    PI: 9.0853
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf05424g00017.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP46.75.1e-154571971
                   E2F_TDP 19 kseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliekkekneirwkg 71
                              ++  + + l+++a++L  e      v  +rRRiYD++N+Le+++++++k+kn +rw+g
  Peinf101Scf05424g00017.1  4 REGVDSIGLDNAADQL--EffvviGV--ERRRIYDVVNILESVGVLSRKAKNLYRWNG 57
                              44558899********..77898888..****************************98 PP
2E2F_TDP75.55.5e-2492172171
                   E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                               rkeksL ll+q+f+kl+++s+ + ++++++ ++L+ +      +k+k RR+YDi+NV+ ++nliek     + k+++rw+g
  Peinf101Scf05424g00017.1  92 RKEKSLMLLAQNFVKLFQCSDVDLISFDKAVSALLDDihdpsAMKTKTRRLYDITNVFASMNLIEKirspdNGKPAFRWIG 172
                               79********************************999*********************************99*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013723.1E-7157IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.3E-14459IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023199.0E-12957IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467853.81E-91658IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.1E-2090173IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013729.0E-2692172IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.3E-1893172IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467856.12E-1294173IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
LCDREGVDSI GLDNAADQLE FFVVIGVERR RIYDVVNILE SVGVLSRKAK NLYRWNGLSA  60
IPQTLDLLKK EGLRDQSTDS STCHNVANVY NRKEKSLMLL AQNFVKLFQC SDVDLISFDK  120
AVSALLDDIH DPSAMKTKTR RLYDITNVFA SMNLIEKIRS PDNGKPAFRW IGWNGNPRTG  180
SPTAPKSDDL KRRTFGTDIT NKIPKRCRDD SSSDLMSNGR VKRLMVAKDD ELKDKNQEMP  240
TEQLNGHGTV DFVYGPFGPA SLPRSGVPGK ENSKQSQSWE DLASAYRPQY QNKGTTKIFF  300
E
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016465902.11e-173PREDICTED: E2F transcription factor-like E2FF isoform X1
TrEMBLA0A1S3ZNG81e-171A0A1S3ZNG8_TOBAC; E2F transcription factor-like E2FF isoform X1
STRINGXP_009771455.11e-172(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25222457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.19e-72DP-E2F-like 1