PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf05495g00036.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

E2F/DP

Protein Properties

Length: 329aa MW: 37367.5 Da PI: 9.2602

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf05495g00036.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	52.5	8.4e-17	25	85	12	71
E2F_TDP 12 kflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliekkekneirwkg 71 +flkl+ ++ + + l+++a++L e v +rRRiYD++N+Le+++++++k+kn +rw+g Peinf101Scf05495g00036.1 25 SFLKLCDREGVDSIGLDNAADQL--EffvviGV--ERRRIYDVVNILESVGVLSRKAKNLYRWNG 85 59****999********..77898888..**************************98 PP
2	E2F_TDP	75.2	6.5e-24	120	200	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 rkeksL ll+q+f+kl+++s+ + ++++++ ++L+ + +k+k RR+YDi+NV+ ++nliek + k+++rw+g Peinf101Scf05495g00036.1 120 RKEKSLMLLAQNFVKLFQCSDVDLISFDKAVSALLDDihdpsAMKTKTRRLYDITNVFASMNLIEKirspdNGKPAFRWIG 200 79******************************999*****************************99*****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01372	4.6E-13	16	85	IPR003316	E2F/DP family, winged-helix DNA-binding domain
SuperFamily	SSF46785	1.31E-9	20	83	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	1.6E-15	25	87	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF02319	1.2E-12	26	85	IPR003316	E2F/DP family, winged-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	2.5E-20	118	201	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM01372	9.0E-26	120	200	IPR003316	E2F/DP family, winged-helix DNA-binding domain
Pfam	PF02319	1.5E-18	121	200	IPR003316	E2F/DP family, winged-helix DNA-binding domain
SuperFamily	SSF46785	7.21E-12	122	201	IPR011991	Winged helix-turn-helix DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005667	Cellular Component	transcription factor complex
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
KFTPKTDLLF YHFFFHDLIS FVLFSFLKLC DREGVDSIGL DNAADQLEFF VVIGVERRRI 60 YDVVNILESV GVLSRKAKNL YRWNGLSAIP QTLDLLKKEG LRDQSTDSST CHNVANVYNR 120 KEKSLMLLAQ NFVKLFQCSD VDLISFDKAV SALLDDIHDP SAMKTKTRRL YDITNVFASM 180 NLIEKIRSPD NGKPAFRWIG WNGNPRTGSP TAPKSDDLKR RTFGTDITNK IPKRCRDDSS 240 SDLMSNGRVK RLMVAKDDEL KDKNQEMPTE QLNGHGTVDF VYGPFGPASL PRSGVPGKEN 300 SKQSQSWEDL ASAYRPQYQN KGTTKIFFE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016465902.1	1e-175	PREDICTED: E2F transcription factor-like E2FF isoform X1
TrEMBL	A0A1S3ZNG8	1e-173	A0A1S3ZNG8_TOBAC; E2F transcription factor-like E2FF isoform X1
STRING	XP_009771455.1	1e-174	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2522	24	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48160.1	5e-73	DP-E2F-like 1