PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf06478g00003.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MYB_related
Protein Properties Length: 101aa    MW: 11551 Da    PI: 7.5122
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf06478g00003.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.11.3e-104189348
                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48
                              +WT  E  +lv++v+++G g+W+ I r+       Rt  ++k++w+++l
  Peinf101Scf06478g00003.1 41 PWTINEVVKLVEGVARYGAGRWSEIKRHAFascPYRTSVDLKDKWRNLL 89
                              8****************************99**9*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.3953493IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.5E-163591IPR009057Homeodomain-like
SMARTSM007179.1E-83891IPR001005SANT/Myb domain
SuperFamilySSF466891.51E-174094IPR009057Homeodomain-like
CDDcd116602.71E-194090No hitNo description
PfamPF002492.8E-84189IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 101 aa     Download sequence    Send to blast
MNIVEIENDT EVNDCSEDNS EDNVVTLPTP KGGMRRKHHR PWTINEVVKL VEGVARYGAG  60
RWSEIKRHAF ASCPYRTSVD LKDKWRNLLK ATFVQLPAEQ G
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 4 repeats of telomeric sequences are required for binding.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU1247401e-92EU124740.1 Solanum lycopersicum chromosome 3 clone C03HBa0295I12, complete sequence.
GenBankHG9754421e-92HG975442.1 Solanum pennellii chromosome ch03, complete genome.
GenBankHG9755151e-92HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006342945.13e-60PREDICTED: uncharacterized protein LOC102604816 isoform X1
RefseqXP_006342946.13e-60PREDICTED: uncharacterized protein LOC102604816 isoform X1
RefseqXP_015162223.12e-60PREDICTED: uncharacterized protein LOC102604816 isoform X2
SwissprotQ9M3471e-12TRP6_ARATH; Telomere repeat-binding protein 6
TrEMBLM0ZR636e-59M0ZR63_SOLTU; Uncharacterized protein
TrEMBLM0ZR643e-59M0ZR64_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000063421e-59(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA118812023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.23e-35TRF-like 6