PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf07127g00008.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

LBD

Protein Properties

Length: 106aa MW: 12034.1 Da PI: 7.9465

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf07127g00008.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	37.5	6.7e-12	5	66	32	93
DUF260 32 nvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 + lFG+sn+lk+lk++p+ ++++am++l+ eA+++++dPv + + ++ + + +++ Peinf101Scf07127g00008.1 5 MPINLFGVSNILKVLKNIPPCQKDNAMKALMLEANICVDDPVDKLITIRQNCNMYRDIFRVQ 66 56689*************************************98887777666555555444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	8.664	1	74	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.4E-9	7	56	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 106 aa Download sequence Send to blast
MIFLMPINLF GVSNILKVLK NIPPCQKDNA MKALMLEANI CVDDPVDKLI TIRQNCNMYR 60 DIFRVQAVDL QEQQNNISAT TASIRRNNCS ILSFDMLPLH GLHGFN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009607074.1	3e-28	PREDICTED: LOB domain-containing protein 7-like
Refseq	XP_016443041.1	3e-28	PREDICTED: LOB domain-containing protein 7-like, partial
TrEMBL	A0A1S3XSW6	6e-27	A0A1S3XSW6_TOBAC; LOB domain-containing protein 7-like
STRING	XP_009607074.1	1e-27	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14294	10	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	1e-08	LOB domain-containing protein 22