PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf08153g00004.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

C2H2

Protein Properties

Length: 252aa MW: 29269.3 Da PI: 7.7911

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf08153g00004.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.5	0.0001	14	37	2	23
EETTTTEEESSHHHHHHHHHH..T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt..H 23 kC+ C + F+ k++L+ H++ H Peinf101Scf08153g00004.1 14 KCSACYRQFNKKEHLVEHMKIsyH 37 7******************97666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	11.406	13	42	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	15	37	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MDHRYESSET LRNKCSACYR QFNKKEHLVE HMKISYHSVH EPMCGICRKH CRSFESLREH 60 LIGPLPKAEC ERIFKDRGCD ICLTILASRN ALRAHRESCQ SRPNNGLHYR MANLGIQDEL 120 RIDNSRGRVV ALACKMVGGG SDGSLDLCAR SFFAMENLYG KSVLKEEGLG FLYDIQIGVQ 180 DPYEDCVATM KLYMRMKAQF HKKENYPLAT DPQNKNNFAS WRQNELERMS PEQLLDFSRS 240 DYYCWCLDTQ DN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC215357	1e-69	AC215357.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0016A12, complete sequence.
GenBank	AC215415	1e-69	AC215415.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0190P16, complete sequence.
GenBank	AC215430	1e-69	AC215430.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0236E02, complete sequence.
GenBank	HG975441	1e-69	HG975441.1 Solanum pennellii chromosome ch02, complete genome.
GenBank	HG975514	1e-69	HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009758098.1	2e-96	PREDICTED: RNA exonuclease 4
Refseq	XP_016453226.1	1e-96	PREDICTED: RNA exonuclease 4-like
Refseq	XP_019237478.1	2e-96	PREDICTED: RNA exonuclease 4
TrEMBL	A0A314ZAN1	1e-103	A0A314ZAN1_PRUYE; RNA exonuclease 4
STRING	XP_004142474.1	5e-97	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4327	2	3