PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf08155g00022.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

C2H2

Protein Properties

Length: 124aa MW: 13824.4 Da PI: 8.9955

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf08155g00022.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.3	0.00012	8	30	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C++ F++ L H++ H Peinf101Scf08155g00022.1 8 YECVFCKRGFNTAQALGGHMNIH 30 99*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	3.5E-4	6	34	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.41E-6	6	35	No hit	No description
PROSITE profile	PS50157	10.928	8	35	IPR007087	Zinc finger, C2H2
Pfam	PF13912	8.5E-6	8	32	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	10	30	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 124 aa Download sequence Send to blast
MRGIGRSYEC VFCKRGFNTA QALGGHMNIH RKDKARNKPS STHSLLNSKH EIQNSLTGAN 60 LRCYQQVSSY IPTYHEAVTD YSSCLTYFPA SSTSTDVHNR QCLNLFGDNW GMNLSLQFGA 120 AANN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009625208.1	3e-35	PREDICTED: transcriptional regulator SUPERMAN-like
Refseq	XP_016438285.1	5e-35	PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBL	A0A1S3XEJ4	1e-33	A0A1S3XEJ4_TOBAC; transcriptional regulator SUPERMAN-like
STRING	XP_009625208.1	1e-34	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2136	21	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43540.1	1e-12	C2H2 family protein