PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf08306g00019.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family LBD
Protein Properties Length: 154aa    MW: 16680 Da    PI: 7.0112
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf08306g00019.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26084.21.9e-26351221100
                    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                               +CaaCk+lrr+Ca++Cvlapyfp ++p kf  +h+            +lpe +r da+ss+vyeA+ar+rdPvyG++g i +lq+
  Peinf101Scf08306g00019.1  35 PCAACKILRRRCAEKCVLAPYFPPNDPIKFTTAHR------------ELPEYQRADAVSSMVYEANARLRDPVYGSAGAICQLQK 107
                               7*******************************997............89************************************ PP

                    DUF260  86 qleqlkaelallkee 100
                               q+++l+a+la++++e
  Peinf101Scf08306g00019.1 108 QVNELQAQLAKTQAE 122
                               ***********9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.03834123IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-2535120IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MESSGTTVST TTSPSLCSVS SSRNSPSPPL VVATPCAACK ILRRRCAEKC VLAPYFPPND  60
PIKFTTAHRE LPEYQRADAV SSMVYEANAR LRDPVYGSAG AICQLQKQVN ELQAQLAKTQ  120
AELVNIQCQQ ANIMALVYME MGQSPPTSPE QSLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-32331309118LOB family transfactor Ramosa2.1
5ly0_B1e-32331309118LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015079078.12e-85LOB domain-containing protein 1-like
SwissprotQ9LQR03e-53LBD1_ARATH; LOB domain-containing protein 1
SwissprotQ9SK084e-53LBD11_ARATH; LOB domain-containing protein 11
TrEMBLM1AC138e-82M1AC13_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000194101e-82(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.11e-53LOB domain-containing protein 1