PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf08785g00003.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family C2H2
Protein Properties Length: 244aa    MW: 27293.1 Da    PI: 8.4851
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf08785g00003.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.000126385123
                              EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                              ykC++C+k+ +++  L +H   H
  Peinf101Scf08785g00003.1 63 YKCEICNKVLKSSQALGSHKTIH 85
                              9******************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.24E-86185No hitNo description
PROSITE profilePS501579.5566390IPR007087Zinc finger, C2H2
PfamPF139126.5E-66387IPR007087Zinc finger, C2H2
SMARTSM003550.0226385IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806585IPR007087Zinc finger, C2H2
PfamPF139127.4E-4110127IPR007087Zinc finger, C2H2
SMARTSM0035561111142IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.24E-8163190No hitNo description
PfamPF139122.2E-9167190IPR007087Zinc finger, C2H2
PROSITE profilePS501579.203168190IPR007087Zinc finger, C2H2
SMARTSM003550.17168190IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280170190IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MSSFSDTSPE EDIAICLMML SKDVWRNIAI CLMMLSKDVW RSNNSSYTMA NVREKQGQQG  60
KCYKCEICNK VLKSSQALGS HKTIHKKTNF QEELQEKERK LRLKNVDDKV HECPFCGKMY  120
GSGQALGVLK SSQALGSHKT IHKKTNFQEE LQDKERKLRL KNVDDKVHEC PFCGKIYGSG  180
QALGGHKRSH ILSLSTTASS SSKVGDSLMD SSSANKFPNG FIDLNMPAPM EDEDFSQQEV  240
SAVS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754451e-69HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009758380.11e-60PREDICTED: zinc finger protein ZAT9-like
RefseqXP_016481923.11e-60PREDICTED: zinc finger protein ZAT9-like
TrEMBLA0A1S4AZH72e-59A0A1S4AZH7_TOBAC; zinc finger protein ZAT9-like
TrEMBLA0A1U7V9842e-59A0A1U7V984_NICSY; zinc finger protein ZAT9-like
STRINGXP_009758380.14e-60(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10952480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.12e-21C2H2-like zinc finger protein