PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf09649g00006.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family NF-X1
Protein Properties Length: 818aa    MW: 90847.3 Da    PI: 8.2783
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf09649g00006.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X116.12.4e-05184202120
                  zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                               CG H C  lCH+GpCp+Cp+
  Peinf101Scf09649g00006.1 184 CG-HYCLLLCHPGPCPSCPK 202
                               **.***************96 PP
2zf-NF-X120.41.1e-06239255420
                  zf-NF-X1   4 HkCqklCHeGpCppCpq 20 
                               H+C+++CHeG+CppC++
  Peinf101Scf09649g00006.1 239 HRCSEICHEGDCPPCKA 255
                               ***************95 PP
3zf-NF-X116.81.5e-05289308120
                  zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                               CG+HkC++ CH+G+C+ Cp+
  Peinf101Scf09649g00006.1 289 CGRHKCERGCHKGECGDCPL 308
                               ******************95 PP
4zf-NF-X118.15.6e-06396415120
                  zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                               CG+H C++ C+ G+CppC++
  Peinf101Scf09649g00006.1 396 CGRHACKRRCCDGDCPPCSE 415
                               ******************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578502.24E-674144No hitNo description
PROSITE patternPS01359075138IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500898.68375139IPR001841Zinc finger, RING-type
CDDcd060085.51E-5172220No hitNo description
SMARTSM004380.037184202IPR000967Zinc finger, NF-X1-type
PfamPF014220.0022184201IPR000967Zinc finger, NF-X1-type
CDDcd060081.66E-7226274No hitNo description
SMARTSM004384.7E-4236255IPR000967Zinc finger, NF-X1-type
PfamPF014226.0E-4238254IPR000967Zinc finger, NF-X1-type
CDDcd060086.27E-9279320No hitNo description
SMARTSM004380.0028289308IPR000967Zinc finger, NF-X1-type
PfamPF014220.0016289307IPR000967Zinc finger, NF-X1-type
CDDcd060089.37E-9333382No hitNo description
SMARTSM004380.055343363IPR000967Zinc finger, NF-X1-type
PfamPF014220.0047343362IPR000967Zinc finger, NF-X1-type
CDDcd060088.35E-8386434No hitNo description
SMARTSM004380.0092396415IPR000967Zinc finger, NF-X1-type
PfamPF014227.9E-4396414IPR000967Zinc finger, NF-X1-type
CDDcd060084.08E-9413461No hitNo description
SMARTSM004380.019423442IPR000967Zinc finger, NF-X1-type
PfamPF014220.034423441IPR000967Zinc finger, NF-X1-type
SMARTSM0043854509554IPR000967Zinc finger, NF-X1-type
PfamPF014224.5509519IPR000967Zinc finger, NF-X1-type
SMARTSM004389.1591624IPR000967Zinc finger, NF-X1-type
PfamPF014220.063591601IPR000967Zinc finger, NF-X1-type
SMARTSM004380.53634652IPR000967Zinc finger, NF-X1-type
SMARTSM004386697718IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 818 aa     Download sequence    Send to blast
MTSTTATLAP PLSPPSSDSD SDSATTSSAH RHHHSDLSST IFKSYLEHSS NHQQQQDLIK  60
IQAFLTSSRS GALSCLICLE RIRPSDPTWS CSSRCFAVFH LHCIQSWAVQ SSNLAAARAL  120
TRAATPNDAS LLWHCPKCRI EYAKLDIPKN YYCFCGKVPD PPHDPWVLPH SCGEVCGRPL  180
KYECGHYCLL LCHPGPCPSC PKLVKAKCFC GGVEDVKRCG FKEFSCNGVC NKVLDCKTHR  240
CSEICHEGDC PPCKAKGVYK CQCGKLELNR ECFDRVFRCE NPCDKLLGCG RHKCERGCHK  300
GECGDCPLQG KRTCPCGKRE YQGLACDVPA SLCGATCGKM LACGFHRCPE RCHRGPCIET  360
CRVVVTKSCR CGSFRKQVPC YQDLTCERKC QKVRDCGRHA CKRRCCDGDC PPCSEMCDRK  420
LRCRNHKCPA PCHRGTCAPC PVMVTISCLC GETHFEVPCG AEAEQKPPKC RKLCRVGRLC  480
RHASNCKPHR CHYGGCPPCR LLCDEEFPCG HKCELRCHDP TPPPLPEFTL KPKKKKSNIQ  540
TEPTPGSPCP PCPQLVWRPC LGNHVGAERM MVCSDRAVFS CDNLCGNLLP CGNHYCTKVC  600
HALVTSTSKS DVSRMAESCE ECTLPCEKER EPACPHPCPL RCHPEECPPC KALIKRSCHC  660
GTMVHVFECI YYNSLSAKEQ LNVRSCGGPC HRKLPNCTHL CPETCHPGEC PSPDQCSKKV  720
TVRCGCQTLK KELLCKDVQA SYQSNGFDPK DISKKQYGLG LLPCNSDCRG KAKAAEAELQ  780
LRKSKAPEEK EPETKDNVSK RRRKRGRVLE ERKTSRLQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009586602.10.0PREDICTED: NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A314LBA50.0A0A314LBA5_NICAT; Nf-x1-type zinc finger protein nfxl2
STRINGXP_009586602.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA93951921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors