PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf09657g00002.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

DBB

Protein Properties

Length: 235aa MW: 26024.3 Da PI: 6.6236

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf09657g00002.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	20.4	1.1e-06	4	45	5	40
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +C+ ++e++ + +C+++ +lC +C + H+ H+++ Peinf101Scf09657g00002.1 4 ICEYCGEQRSIVYCRSDAACLCLSCDRNVHSAnalaqrHSRT 45 7*****************************657777777765 PP
2	zf-B_box	25.4	2.9e-08	46	88	4	40
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +C++++++++ C + ++ lC++C ++H + H+++ Peinf101Scf09657g00002.1 46 LICERCNSQPAVVRCIEEKTSLCQSCDWSGHAStsssstHKRQ 88 68*****************************778888888875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	9.698	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	4.69E-7	4	47	No hit	No description
SMART	SM00336	4.9E-8	4	47	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	9.314	43	90	IPR000315	B-box-type zinc finger
CDD	cd00021	5.61E-5	47	77	No hit	No description
SMART	SM00336	0.91	48	90	IPR000315	B-box-type zinc finger

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MGYICEYCGE QRSIVYCRSD AACLCLSCDR NVHSANALAQ RHSRTLICER CNSQPAVVRC 60 IEEKTSLCQS CDWSGHASTS SSSTHKRQAL SSYTGCPSAA ELSNIWSFLL DDPSVGDTCE 120 QRMGSMSIND SRSKTSQGPQ GKENLRNMCA AVEASDMYIS DKSTLLMESS MPTLDNKPHN 180 VELPIGSTNS ASLKSRLSCT MLYFKGLDKL DFGFDSVVFF YYTTQEINRV LRESK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975451	1e-170	HG975451.1 Solanum pennellii chromosome ch12, complete genome.
GenBank	HG975524	1e-170	HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016554510.1	1e-108	PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
Refseq	XP_016554511.1	1e-108	PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
Refseq	XP_016554512.1	1e-108	PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
Refseq	XP_016554513.1	1e-108	PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
Refseq	XP_016554514.1	1e-108	PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
Swissprot	Q9LUA9	8e-60	COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBL	A0A2G2YTW9	1e-107	A0A2G2YTW9_CAPAN; Zinc finger protein CONSTANS-LIKE 9
TrEMBL	A0A2G3BN52	1e-107	A0A2G3BN52_CAPCH; Zinc finger protein CONSTANS-LIKE 9
STRING	Solyc12g006240.1.1	1e-107	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1270	24	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07650.4	2e-60	CONSTANS-like 9

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]