PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf09857g00003.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family WOX
Protein Properties Length: 222aa    MW: 25525.5 Da    PI: 9.7432
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf09857g00003.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.43.3e-201172157
                              TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                  Homeobox  1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                              r +R+++t+eql  Lee+++k  r+p+a++++ ++++l    +++ ++V++WFqN++a++++
  Peinf101Scf09857g00003.1 11 RPTRWSPTPEQLMLLEEMYRKgLRNPNATQIQNITAHLscygKIEGKNVFYWFQNHKARDRQ 72
                              569*****************99*************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.657873IPR001356Homeobox domain
SMARTSM003892.0E-61077IPR001356Homeobox domain
PfamPF000468.3E-181172IPR001356Homeobox domain
SuperFamilySSF466891.75E-111173IPR009057Homeodomain-like
CDDcd000864.40E-51173No hitNo description
Gene3DG3DSA:1.10.10.603.0E-71472IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009908Biological Processflower development
GO:0009943Biological Processadaxial/abaxial axis specification
GO:0009947Biological Processcentrolateral axis specification
GO:0010865Biological Processstipule development
GO:0048513Biological Processanimal organ development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MSLLKREKIT RPTRWSPTPE QLMLLEEMYR KGLRNPNATQ IQNITAHLSC YGKIEGKNVF  60
YWFQNHKARD RQKLKKKLLA QMNQQQILAQ HHPVDAHSTT NNSLFQLPEY SHNSSSVVNQ  120
ICPFTSTTGF LQEGGIKEAS PRVMTYLYPM DLSRPSEMEN CMVRPYGKDW ILMMNITPPL  180
PCNVNDRPLK TLPLFPITTT STLKDQSIIT STMENNVVLS LS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ6281720.0FJ628172.1 Petunia x hybrida cultivar W138 WOX3 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019239462.11e-112PREDICTED: WUSCHEL-related homeobox 3-like
TrEMBLC9WKA61e-165C9WKA6_PETHY; WOX3 protein
STRINGXP_009778688.11e-110(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29591951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.18e-40WOX family protein