PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf10366g00015.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family NF-YA
Protein Properties Length: 136aa    MW: 15192 Da    PI: 6.7972
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf10366g00015.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA41.25.4e-1327483758
                 CBFB_NFYA 37 pylheSRhkhAlrRpRgsgGrF 58
                              pylheSRh+hAl+R+Rg+gGrF
  Peinf101Scf10366g00015.1 27 PYLHESRHRHALNRARGPGGRF 48
                              8********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5115217.047151IPR001289Nuclear transcription factor Y subunit A
SMARTSM005210.0045351IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.1E-102748IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
VQSQMLGTVS ARMPLPLDLQ QDEPIFPYLH ESRHRHALNR ARGPGGRFLN IKKLRESKSP  60
DLIDDQHVPV SNELQLNTKM LEPDVYQSTP ASSGITSCSN GDAIYHQQSL KYSAFSLHIR  120
GALEQDKGEN DLSTNP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4897611e-173AM489761.1 Petunia x hybrida partial mRNA for YA6 (nf-YA gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006342951.14e-57PREDICTED: nuclear transcription factor Y subunit A-3-like
TrEMBLA5PGU93e-73A5PGU9_PETHY; YA6 (Fragment)
STRINGPGSC0003DMT4000063581e-56(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA139661114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54160.17e-18nuclear factor Y, subunit A5