PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf11387g00001.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

Dof

Protein Properties

Length: 319aa MW: 34527 Da PI: 9.0894

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf11387g00001.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.4	3.2e-38	69	128	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e+ lkcprCdstntkfCy+nny+lsqPr+fCk+CrryWt+GGalr vPvGgg+r+nkks+ Peinf101Scf11387g00001.1 69 EAGLKCPRCDSTNTKFCYFNNYNLSQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKKSK 128 6779*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-37	52	121	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.8E-32	71	126	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.506	72	126	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	74	110	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MVFSSFPVYL DHPNLQQLQQ PDHQQGNPGV ENPQLSSLPP PMQVGASPGS IRPGSMVDRA 60 RLAKIPLPEA GLKCPRCDST NTKFCYFNNY NLSQPRHFCK TCRRYWTRGG ALRSVPVGGG 120 CRRNKKSKNS SNNSKTAGGN STERQIGTTS TSTSVRSPSS CSTDITGHHF SQSSTQLTPL 180 MAAFQNLNHH YGGFQPPPLV STHNNNGGLG EMGFQIGSNN NTNNLQASGG SDHHQWRLPS 240 LAAGSFEPTT NLHPFQVEGI EASSSGISHD AVRMEENNNN QGLNSTKQFL GTLENNQYWG 300 GNAWTGFSGL NSSSTNHLL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009774236.1	1e-172	PREDICTED: dof zinc finger protein DOF2.4-like
Refseq	XP_009774300.1	1e-172	PREDICTED: dof zinc finger protein DOF2.4-like
Refseq	XP_009774363.1	1e-172	PREDICTED: dof zinc finger protein DOF2.4-like
Refseq	XP_009774425.1	1e-172	PREDICTED: dof zinc finger protein DOF2.4-like
TrEMBL	A0A1U7WAH6	1e-171	A0A1U7WAH6_NICSY; dof zinc finger protein DOF2.4-like
STRING	XP_009774236.1	1e-171	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.1	3e-46	OBF-binding protein 3