PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf16070g00008.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

NF-YA

Protein Properties

Length: 231aa MW: 25360.4 Da PI: 9.85

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf16070g00008.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	101.5	7.9e-32	88	144	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RR++Rak+e ekkl +k rkpylheSRh+hAl+R+R+sgGrF Peinf101Scf16070g00008.1 88 QEPVYVNAKQYHGILRRRESRAKAELEKKL-IKVRKPYLHESRHQHALKRARASGGRF 144 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	2.5E-34	86	147	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	35.638	87	147	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	4.1E-27	89	144	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.5E-23	90	112	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	92	112	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	2.5E-23	121	144	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
LVSKLDGSYA QVDQSLQQIA SIIPPRVDGS LTQPPQLELV GHTIGCAPNL YADPYYGGMM 60 TPFGQPMVPP NVLDMHHARM PLPHEMTQEP VYVNAKQYHG ILRRRESRAK AELEKKLIKV 120 RKPYLHESRH QHALKRARAS GGRFARKSDA DTSKGTSSGS AVSSQSRCSS GSEPLPSSTA 180 DVPEKHNDGS LTERQHSYSN GNGYGKKNSF HESKYQPQST HFGEGGSAIK Q

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	2e-19	87	162	1	76	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006366543.1	1e-129	PREDICTED: nuclear transcription factor Y subunit A-1-like
Swissprot	Q9LXV5	1e-48	NFYA1_ARATH; Nuclear transcription factor Y subunit A-1
TrEMBL	M1AQ62	1e-128	M1AQ62_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400027785	1e-129	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3111	22	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12840.4	5e-49	nuclear factor Y, subunit A1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Siriwardana CL, et al. NUCLEAR FACTOR Y, Subunit A (NF-YA) Proteins Positively Regulate Flowering and Act Through FLOWERING LOCUS T. PLoS Genet., 2016. 12(12): p. e1006496 [PMID:27977687] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]