PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf18903g00001.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

NAC

Protein Properties

Length: 162aa MW: 18822.8 Da PI: 9.3077

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf18903g00001.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	188.2	1.8e-58	22	149	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 lppGfrFhPtdee++++yL++kv +k++++ +++evd++k+ePwdLp+k+k +ekewyfF++rd+ky+tg r+nrat+sgyWka Peinf101Scf18903g00001.1 22 LPPGFRFHPTDEEIITCYLQEKVMDKRFTA-IAVAEVDLNKSEPWDLPAKAKMGEKEWYFFCQRDRKYPTGMRTNRATESGYWKA 105 79***********************999.88***********99999**************************** PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 tgkdke+++ kg lvg+kktLvfykgrapkgekt+Wvmheyrle Peinf101Scf18903g00001.1 106 TGKDKEIYKGKGCLVGMKKTLVFYKGRAPKGEKTNWVMHEYRLE 149 *****9******************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.41E-61	18	156	IPR003441	NAC domain
PROSITE profile	PS51005	54.633	22	162	IPR003441	NAC domain
Pfam	PF02365	8.0E-31	23	148	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
MGTPVLPMQV INQESDHDIL NLPPGFRFHP TDEEIITCYL QEKVMDKRFT AIAVAEVDLN 60 KSEPWDLPAK AKMGEKEWYF FCQRDRKYPT GMRTNRATES GYWKATGKDK EIYKGKGCLV 120 GMKKTLVFYK GRAPKGEKTN WVMHEYRLEG KLSYNCFHKA AM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-52	13	148	7	142	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-52	13	148	7	142	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-52	13	148	7	142	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-52	13	148	7	142	NO APICAL MERISTEM PROTEIN
3swm_A	2e-52	13	148	10	145	NAC domain-containing protein 19
3swm_B	2e-52	13	148	10	145	NAC domain-containing protein 19
3swm_C	2e-52	13	148	10	145	NAC domain-containing protein 19
3swm_D	2e-52	13	148	10	145	NAC domain-containing protein 19
3swp_A	2e-52	13	148	10	145	NAC domain-containing protein 19
3swp_B	2e-52	13	148	10	145	NAC domain-containing protein 19
3swp_C	2e-52	13	148	10	145	NAC domain-containing protein 19
3swp_D	2e-52	13	148	10	145	NAC domain-containing protein 19
4dul_A	3e-52	13	148	7	142	NAC domain-containing protein 19
4dul_B	3e-52	13	148	7	142	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF510214	0.0	AF510214.1 Petunia x hybrida nam-like protein 17 (NH17) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009587307.1	1e-101	PREDICTED: NAC domain-containing protein 79-like isoform X1
Refseq	XP_016471991.1	1e-101	PREDICTED: NAC domain-containing protein 79-like
Refseq	XP_018622492.1	1e-101	PREDICTED: NAC domain-containing protein 92-like isoform X2
Swissprot	Q9FK44	5e-89	NAC87_ARATH; NAC domain-containing protein 87
TrEMBL	A0A1S4A5Z6	1e-100	A0A1S4A5Z6_TOBAC; NAC domain-containing protein 79-like
STRING	XP_009587307.1	1e-101	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.2	4e-92	Arabidopsis NAC domain containing protein 87

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]